Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0460.Seq
         (889 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical pr...    45   8e-05
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    30   1.9  
AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical...    29   5.9  

>Z66519-5|CAA91382.2|  500|Caenorhabditis elegans Hypothetical
           protein B0334.5 protein.
          Length = 500

 Score = 44.8 bits (101), Expect = 8e-05
 Identities = 18/36 (50%), Positives = 26/36 (72%)
 Frame = +1

Query: 142 ASFHKVIVIIGFLSLFHTAFSATQHRSYLRITSQEF 249
           ++ +++I I+  LSL H A+SA QHR YLR+T Q F
Sbjct: 3   STIYRLITIVSLLSLLHCAYSAAQHRFYLRLTEQPF 38


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +2

Query: 245  SLPLTIGYCHPSCGQFVCCHVGSVECGG*SSRNTSCC*IKCYQMGDT 385
            S P T G C     + VC    +  C G SSR+ +C    CY   D+
Sbjct: 918  SCPTTCGSCSTVTQKRVCMSPSTCPCQGVSSRSVNCGITVCYFPDDS 964


>AL031627-11|CAA20962.2|  355|Caenorhabditis elegans Hypothetical
           protein Y102A5C.21 protein.
          Length = 355

 Score = 28.7 bits (61), Expect = 5.9
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = +3

Query: 159 YCDHWFSFVIPYSFLSYTTSIIFEDHVTRVYHLPLDIVIQAVV 287
           Y  ++ +  + YSFL+   SI +  HV ++  LPL I+   V+
Sbjct: 9   YATNYSNCNLTYSFLASWQSISYTSHVIQLVALPLQILALYVI 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,901,264
Number of Sequences: 27780
Number of extensions: 354020
Number of successful extensions: 857
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2244863852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)