Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0460.Seq
         (889 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.6  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   4.9  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   6.5  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   6.5  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +3

Query: 255 LPLDIVIQAVVSLFAVMWGVL 317
           LPL   + A++ LF + WG L
Sbjct: 216 LPLGCPVNAIMGLFVLWWGWL 236


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 363 NAIKWETQNNLPSFYIFNH 419
           N IK   QNN+P++ + NH
Sbjct: 342 NWIKGTPQNNVPNWVMGNH 360


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 763 IWIGFNWLGVKGYFTX*F 816
           IW G  W G   YFT  F
Sbjct: 224 IWKGVKWTGKVVYFTSLF 241


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +1

Query: 763 IWIGFNWLGVKGYFTX*F 816
           IW G  W G   YFT  F
Sbjct: 277 IWKGVKWTGKVVYFTSLF 294


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 220,363
Number of Sequences: 438
Number of extensions: 4885
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 28662543
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)