Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0460.Seq
         (889 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g03345.1 68418.m00287 expressed protein                             38   0.009

>At5g03345.1 68418.m00287 expressed protein
          Length = 104

 Score = 37.9 bits (84), Expect = 0.009
 Identities = 22/80 (27%), Positives = 39/80 (48%), Gaps = 1/80 (1%)
 Frame = +3

Query: 192 YSFLSYTTSI-IFEDHVTRVYHLPLDIVIQAVVSLFAVMWGVLNVAGNLREIPAAAELNA 368
           YS + Y   + I E+  +R    P++++++ ++ L   MW  L   G    I   ++ N 
Sbjct: 20  YSTIQYRGLLKIMEEEFSRP---PINVILELIIGLALCMWAALTFPGKFLSIHPDSDENR 76

Query: 369 IKWETQNNLPSFYIFNHRGK 428
             +   N+   F IFNHRG+
Sbjct: 77  AVFLPDNS--DFMIFNHRGR 94



 Score = 30.3 bits (65), Expect = 1.8
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +1

Query: 157 VIVIIGFLSLFHTAFSATQHRSYLRITSQEFT 252
           ++ + G L L H A+S  Q+R  L+I  +EF+
Sbjct: 6   LVGVFGVLILSHAAYSTIQYRGLLKIMEEEFS 37


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,444,233
Number of Sequences: 28952
Number of extensions: 309108
Number of successful extensions: 590
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 584
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2081245872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)