Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0453.Seq
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces ...    39   9e-04
SPBC947.01 |||AAA family ATPase, unknown biological role|Schizos...    29   1.2  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    27   2.8  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    27   2.8  
SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomy...    27   3.7  
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||...    27   3.7  
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc...    26   8.5  

>SPAC25H1.04 |mug105||DUF1671 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 244

 Score = 39.1 bits (87), Expect = 9e-04
 Identities = 16/36 (44%), Positives = 24/36 (66%)
 Frame = +1

Query: 49  LIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWLK 156
           L  G+ +Y+ +   G D RGWGCG+R +Q + SWL+
Sbjct: 22  LADGDIDYF-FTVTGID-RGWGCGWRNIQMLISWLQ 55


>SPBC947.01 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 14/50 (28%), Positives = 28/50 (56%)
 Frame = -3

Query: 217 SQPVSIESLVLKVQLHPYDLISARNISSEEFYNRNPSPYRQIHHTSNDNI 68
           S P+S  + +  + +    L SA + SS+    ++PSPY+   ++S+D +
Sbjct: 259 STPLSFHAPIPPLHVPAVPLTSASHSSSDGKSRKHPSPYKPYLNSSHDTL 308


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 423 SSKGIMGIHIGDHGASLLVVDPHYVGKQPVKIIYKTMGWVKWQPLHDFLSS 575
           SS    G+H+    A +L++  HY   Q ++ +   +    WQ L +FLSS
Sbjct: 572 SSLSFFGLHVPFASAPILLLSLHYENSQDIQAVVTKL----WQVL-EFLSS 617


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 9/25 (36%), Positives = 18/25 (72%)
 Frame = +3

Query: 315 IIHINKGDDLKTIVDALVKHFIEYS 389
           ++   +G+DLK ++DAL+   +E+S
Sbjct: 566 MVENGQGEDLKRVIDALLNRAVEFS 590


>SPAC1687.19c |||queuine tRNA-ribosyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 351 IVDALVKHFIEYSSPVMMGGDVDCSSKGIMGIHIGDHGASLLVVDPHYVGKQPVKIIYKT 530
           + D  + H +   SPV M      S KG++   +   G  +++ + +++G +P + +  T
Sbjct: 23  VTDIQLPHGL-VESPVFMPVGTQASLKGVLPEQLDALGCKIMLNNTYHLGLKPGQEVLDT 81

Query: 531 MG 536
           +G
Sbjct: 82  VG 83


>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 3971

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 15/58 (25%), Positives = 30/58 (51%)
 Frame = -3

Query: 418  STSPPIITGLLYSMKCLTKASTIVLRSSPLFI*IILHGTSNSLSITKQTSKLPIHVSN 245
            +TSPPI +  + +      +ST+V  S+P+    +++ ++   S T   +  PI  S+
Sbjct: 1651 NTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSS 1708


>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 969

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 9/31 (29%), Positives = 17/31 (54%)
 Frame = -1

Query: 315 FYMEHQIVYQLPSKPQNCQSMSRTNKRFGFI 223
           FY  H  +YQ+  +P    S++  ++R  +I
Sbjct: 701 FYRNHNNIYQISQEPYTWSSVAEASRRAMYI 731


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,550,666
Number of Sequences: 5004
Number of extensions: 72853
Number of successful extensions: 243
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 167
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 243
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)