Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0453.Seq
         (912 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_1054 + 10847342-10847543,10847627-10847962,10848557-108488...   100   3e-21
02_01_0052 + 392339-392395,392604-393400,393520-393634,393831-39...    40   0.004
07_01_0808 - 6326767-6327788,6328270-6328459                           31   1.7  
03_02_0514 + 9038606-9039790,9040211-9040432,9040548-9040655,904...    30   2.9  
10_01_0333 + 3675806-3676001,3676783-3677783                           29   6.8  

>12_01_1054 +
           10847342-10847543,10847627-10847962,10848557-10848807,
           10849226-10849313,10849548-10849723,10850597-10850656,
           10850811-10850901,10851563-10851639,10852565-10852653,
           10852950-10853061,10853623-10853725,10854892-10855121
          Length = 604

 Score = 99.5 bits (237), Expect = 3e-21
 Identities = 43/79 (54%), Positives = 56/79 (70%), Gaps = 1/79 (1%)
 Frame = +1

Query: 49  LIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWLKL-NHMDVAVPSIREIQSILVDLED 225
           LI G+YEYYHYL DG DD GWGC YR+LQTI SW +L  +  + VPS REIQ +LV++ D
Sbjct: 409 LIDGSYEYYHYLHDGIDDNGWGCAYRSLQTIMSWYRLQQYSSINVPSHREIQQVLVEIGD 468

Query: 226 KSKTFIGSRHGLAVLRFAW 282
           K  +FIGSR  +  +  ++
Sbjct: 469 KDPSFIGSREWIGAIELSF 487



 Score = 82.6 bits (195), Expect = 4e-16
 Identities = 46/124 (37%), Positives = 65/124 (52%), Gaps = 8/124 (6%)
 Frame = +3

Query: 255 WIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGGDVDCSSKG 434
           WIG+ E+  V+DKL  V CK+I++  GD+L      L  HF    +PVM+GG V   +  
Sbjct: 479 WIGAIELSFVLDKLLGVSCKVINVRSGDELPEKCRELAIHFETQGTPVMIGGGV--LAYT 536

Query: 435 IMGIHIGDHG--ASLLVVDPHYVGKQPVKIIYKTMGWVKWQPLHD------FLSSSFYNL 590
           ++G+   +     + L++DPHY G   +K I    GW  W+   D      FL   FYNL
Sbjct: 537 LLGVDYNESSGDCAFLILDPHYTGADDLKKIVNG-GWCGWKKSIDSKGRSFFLKDKFYNL 595

Query: 591 CLPQ 602
            LPQ
Sbjct: 596 LLPQ 599


>02_01_0052 +
           392339-392395,392604-393400,393520-393634,393831-393926,
           394008-394079,395286-395381
          Length = 410

 Score = 39.5 bits (88), Expect = 0.004
 Identities = 27/95 (28%), Positives = 44/95 (46%), Gaps = 10/95 (10%)
 Frame = +1

Query: 1   VNIHESLVSKQTGKSY-LIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWLKLNHMDVA 177
           +N+  + +  + G S  +I G+ ++Y  L    +D+GWGCG+R +Q + S L     +  
Sbjct: 77  MNLLRACLESEAGSSTSMISGHVDHYQSLSS--EDKGWGCGWRNIQMLSSHLLKQRPEAR 134

Query: 178 ---------VPSIREIQSILVDLEDKSKTFIGSRH 255
                    VP I  +Q  L    DK    +GS H
Sbjct: 135 EALFGGSGFVPDIPSLQRWLEIAWDKKFDTLGSSH 169


>07_01_0808 - 6326767-6327788,6328270-6328459
          Length = 403

 Score = 30.7 bits (66), Expect = 1.7
 Identities = 16/53 (30%), Positives = 27/53 (50%)
 Frame = -3

Query: 289 SITKQTSKLPIHVSNQ*TFWIYLPSQPVSIESLVLKVQLHPYDLISARNISSE 131
           ++T     L +H  N   FW+  P  P  ++ +  KV LH   + ++RN+ SE
Sbjct: 287 ALTDAFMPLGVHDWNS-IFWVVHPGGPAILDQVEEKVALHKARMRASRNVLSE 338


>03_02_0514 +
           9038606-9039790,9040211-9040432,9040548-9040655,
           9041608-9041802,9041905-9042153,9042525-9042672,
           9042673-9042779,9043311-9043475,9044506-9045948
          Length = 1273

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 20/51 (39%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 67  EYYHYLCDGFDDRGWGCGYRTLQTIC-SWLKLNHMDVAVPSIREIQSILVD 216
           EY H   DG DDR      RT +T C +  KL+ + VA P++ E   + VD
Sbjct: 513 EYVHPYLDGVDDRNKN---RTFKTSCFNTRKLSPVFVAGPNMDEAPPVWVD 560


>10_01_0333 + 3675806-3676001,3676783-3677783
          Length = 398

 Score = 28.7 bits (61), Expect = 6.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 235 FWIYLPSQPVSIESLVLKVQLHPYDLISARNISSE 131
           FW   P     ++++  K+QLHP  L ++R + SE
Sbjct: 304 FWAVHPGGRAILDNIEDKLQLHPCKLAASRQVLSE 338


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,491,793
Number of Sequences: 37544
Number of extensions: 447879
Number of successful extensions: 927
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2588957540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)