Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0453.Seq
         (912 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)              88   1e-17
SB_28090| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)                      29   6.9  

>SB_43687| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 708

 Score = 87.8 bits (208), Expect = 1e-17
 Identities = 39/77 (50%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
 Frame = +1

Query: 25  SKQTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWLK-LNHMDVAVPSIREIQ 201
           S   G   L+ G Y Y+HY+ DGF+D GWGC YR+LQTICSW +   +     PS  EIQ
Sbjct: 480 STPDGTVELVDGKYSYHHYMQDGFNDDGWGCAYRSLQTICSWFRHQGYTSKPAPSHHEIQ 539

Query: 202 SILVDLEDKSKTFIGSR 252
             LVD+ DK   FIGS+
Sbjct: 540 QALVDIGDKKDNFIGSK 556



 Score = 51.2 bits (117), Expect = 1e-06
 Identities = 22/54 (40%), Positives = 34/54 (62%)
 Frame = +3

Query: 255 WIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGGDV 416
           WIGSFEV + ++ L  V  KI+++N G D+ +    L+ HF    +P+M+GG V
Sbjct: 558 WIGSFEVSMCLEHLLGVTSKILYVNSGADMASKGRDLLHHFQTQGTPIMIGGGV 611


>SB_28090| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 222

 Score = 32.3 bits (70), Expect = 0.56
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +1

Query: 100 DRGWGCGYRTLQTICSWL 153
           D GWGCGYR LQ + S L
Sbjct: 192 DAGWGCGYRNLQMLVSCL 209


>SB_22334| Best HMM Match : VAR1 (HMM E-Value=1.9)
          Length = 525

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -3

Query: 118 RNPSPYRQIHHTSNDNIHNFL*LNMIFLFVLILKIHGCL 2
           RNP PY +  H +N NI     +N+   F+ IL+I+  L
Sbjct: 39  RNPEPYWRTCHGANKNITKQRRVNIPVSFLSILRIYSRL 77


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,775,128
Number of Sequences: 59808
Number of extensions: 518781
Number of successful extensions: 1172
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1171
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2633701421
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)