Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0453.Seq
         (912 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical pr...    93   3e-19
U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical pr...    93   3e-19
U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical pr...    31   1.5  
AC024753-7|AAF60459.1|  196|Caenorhabditis elegans Hypothetical ...    28   8.1  

>U70854-2|AAO91721.1|  575|Caenorhabditis elegans Hypothetical
           protein F38A5.1b protein.
          Length = 575

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 45/100 (45%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
 Frame = +1

Query: 10  HESLVSKQ-TGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWLKLN-HMDVAVP 183
           H S+ + Q  G+   + G Y Y+HY+ DG DD GWGC YR+ QTI SW  LN + D  VP
Sbjct: 371 HLSITNYQPVGEITTVNGPYNYHHYMQDGIDDSGWGCAYRSFQTIWSWFILNGYTDKPVP 430

Query: 184 SIREIQSILVDLEDKSKTFIGSRHGLAVLRFAW*LINYLM 303
           S REIQ  LVD++DK   F+GSR  +     ++ ++N L+
Sbjct: 431 SHREIQQALVDIQDKQAKFVGSRQWIGSTEISF-VLNELL 469



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
 Frame = +3

Query: 255 WIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGGDVDCSSKG 434
           WIGS E+  V+++L  + C+ I  N G ++   V  L +HF    +PVM+GG++   +  
Sbjct: 455 WIGSTEISFVLNELLKLECRFIATNSGAEVVERVRELARHFETSGTPVMIGGNM--LAHT 512

Query: 435 IMGIHIGD--HGASLLVVDPHYVGKQPVKIIYKTMGWVKWQPLHDFLSSSFYNLCLPQ 602
           I+G+   D       LV+DPHY G + +K I  + GW  W+P   +    FYN+ LPQ
Sbjct: 513 ILGVDFNDTTGETKFLVLDPHYTGSEDIKTI-TSKGWCAWKPASFWSKDHFYNMVLPQ 569


>U70854-1|AAB09146.1|  589|Caenorhabditis elegans Hypothetical
           protein F38A5.1a protein.
          Length = 589

 Score = 92.7 bits (220), Expect = 3e-19
 Identities = 45/100 (45%), Positives = 62/100 (62%), Gaps = 2/100 (2%)
 Frame = +1

Query: 10  HESLVSKQ-TGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWLKLN-HMDVAVP 183
           H S+ + Q  G+   + G Y Y+HY+ DG DD GWGC YR+ QTI SW  LN + D  VP
Sbjct: 385 HLSITNYQPVGEITTVNGPYNYHHYMQDGIDDSGWGCAYRSFQTIWSWFILNGYTDKPVP 444

Query: 184 SIREIQSILVDLEDKSKTFIGSRHGLAVLRFAW*LINYLM 303
           S REIQ  LVD++DK   F+GSR  +     ++ ++N L+
Sbjct: 445 SHREIQQALVDIQDKQAKFVGSRQWIGSTEISF-VLNELL 483



 Score = 84.2 bits (199), Expect = 1e-16
 Identities = 42/118 (35%), Positives = 65/118 (55%), Gaps = 2/118 (1%)
 Frame = +3

Query: 255 WIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGGDVDCSSKG 434
           WIGS E+  V+++L  + C+ I  N G ++   V  L +HF    +PVM+GG++   +  
Sbjct: 469 WIGSTEISFVLNELLKLECRFIATNSGAEVVERVRELARHFETSGTPVMIGGNM--LAHT 526

Query: 435 IMGIHIGD--HGASLLVVDPHYVGKQPVKIIYKTMGWVKWQPLHDFLSSSFYNLCLPQ 602
           I+G+   D       LV+DPHY G + +K I  + GW  W+P   +    FYN+ LPQ
Sbjct: 527 ILGVDFNDTTGETKFLVLDPHYTGSEDIKTI-TSKGWCAWKPASFWSKDHFYNMVLPQ 583


>U41546-6|AAC48223.1|  798|Caenorhabditis elegans Hypothetical
           protein T25B6.2 protein.
          Length = 798

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = +1

Query: 76  HYLCDGFDDRGWGCGYRTLQTICSWLKLNHMD 171
           H L  G+DD G   G+    T CSW K   MD
Sbjct: 614 HELTHGYDDEGVQFGFNGELTDCSWNKCGWMD 645


>AC024753-7|AAF60459.1|  196|Caenorhabditis elegans Hypothetical
           protein Y23H5B.3 protein.
          Length = 196

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 85  CDGFDDRGWGCGYRTLQTICSWLKLNHMDVAVPSIREIQSILVD 216
           CDG  D  +GC   +L  I  W+     +  +PS++  QS+  D
Sbjct: 21  CDGHYDLEYGCNKLSLDLIRDWIS----NKPLPSVKAAQSLYSD 60


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,302,680
Number of Sequences: 27780
Number of extensions: 396841
Number of successful extensions: 1002
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 959
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2328783996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)