Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0453.Seq
(912 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g48380.2 68416.m05281 expressed protein 105 4e-23
At3g48380.1 68416.m05280 expressed protein 105 4e-23
At5g24680.1 68418.m02917 expressed protein similar to unknown pr... 34 0.11
At1g23340.2 68414.m02919 expressed protein similar to At1g70550... 29 3.2
At1g23340.1 68414.m02918 expressed protein similar to At1g70550... 29 3.2
At5g61230.1 68418.m07680 ankyrin repeat family protein contains ... 29 4.3
At1g49270.1 68414.m05524 protein kinase family protein contains ... 28 9.9
>At3g48380.2 68416.m05281 expressed protein
Length = 640
Score = 105 bits (252), Expect = 4e-23
Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 VNIHESLVSKQTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWLKLNH-MDVA 177
+ I S VS+ G + +I+G+YEYYHYL DGFDD GWGC YR+LQTI SW +L H ++
Sbjct: 431 IGIPSSGVSE--GVASIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSIS 488
Query: 178 VPSIREIQSILVDLEDKSKTFIGSRHGLAVLRFAW*LINYLMFHVKL 318
VPS REIQ LV++ DK +F+GSR + + ++ L L K+
Sbjct: 489 VPSHREIQQTLVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKI 535
Score = 79.8 bits (188), Expect = 2e-15
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Frame = +3
Query: 255 WIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGGDVDCSSKG 434
WIG+ E+ V+DKL V CKI++ G +L L HF +P+M+GG V +
Sbjct: 515 WIGAIELSFVLDKLLGVSCKIMNFRSGSELPEKCRELAMHFENQGTPIMIGGGVLAYTLL 574
Query: 435 IMGIHIGDHGASLLVVDPHYVGKQPVKIIYKTMGWVKWQPLHD------FLSSSFYNLCL 596
+ G + L++DPHY G + K I GW W+ D FL + FYNL L
Sbjct: 575 GVDYDEGSGDCAFLILDPHYTGSEDHKKIVNG-GWCGWKKAVDSKGKSFFLHNKFYNLLL 633
Query: 597 PQ 602
PQ
Sbjct: 634 PQ 635
>At3g48380.1 68416.m05280 expressed protein
Length = 645
Score = 105 bits (252), Expect = 4e-23
Identities = 51/107 (47%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Frame = +1
Query: 1 VNIHESLVSKQTGKSYLIKGNYEYYHYLCDGFDDRGWGCGYRTLQTICSWLKLNH-MDVA 177
+ I S VS+ G + +I+G+YEYYHYL DGFDD GWGC YR+LQTI SW +L H ++
Sbjct: 436 IGIPSSGVSE--GVASIIQGSYEYYHYLQDGFDDSGWGCAYRSLQTIISWFRLQHYTSIS 493
Query: 178 VPSIREIQSILVDLEDKSKTFIGSRHGLAVLRFAW*LINYLMFHVKL 318
VPS REIQ LV++ DK +F+GSR + + ++ L L K+
Sbjct: 494 VPSHREIQQTLVEIGDKDPSFVGSREWIGAIELSFVLDKLLGVSCKI 540
Score = 79.8 bits (188), Expect = 2e-15
Identities = 44/122 (36%), Positives = 61/122 (50%), Gaps = 6/122 (4%)
Frame = +3
Query: 255 WIGSFEVCLVIDKLFDVPCKIIHINKGDDLKTIVDALVKHFIEYSSPVMMGGDVDCSSKG 434
WIG+ E+ V+DKL V CKI++ G +L L HF +P+M+GG V +
Sbjct: 520 WIGAIELSFVLDKLLGVSCKIMNFRSGSELPEKCRELAMHFENQGTPIMIGGGVLAYTLL 579
Query: 435 IMGIHIGDHGASLLVVDPHYVGKQPVKIIYKTMGWVKWQPLHD------FLSSSFYNLCL 596
+ G + L++DPHY G + K I GW W+ D FL + FYNL L
Sbjct: 580 GVDYDEGSGDCAFLILDPHYTGSEDHKKIVNG-GWCGWKKAVDSKGKSFFLHNKFYNLLL 638
Query: 597 PQ 602
PQ
Sbjct: 639 PQ 640
>At5g24680.1 68418.m02917 expressed protein similar to unknown
protein (pir||T38384)
Length = 399
Score = 34.3 bits (75), Expect = 0.11
Identities = 13/27 (48%), Positives = 20/27 (74%)
Frame = +1
Query: 97 DDRGWGCGYRTLQTICSWLKLNHMDVA 177
+D+GWGCG++ +Q CS L L+H + A
Sbjct: 124 EDKGWGCGWKNIQMQCSHL-LSHREEA 149
>At1g23340.2 68414.m02919 expressed protein similar to At1g70550,
At1g10750 contains Pfam profile PF03080: Arabidopsis
proteins of unknown function
Length = 409
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 419 LLI*RDHGHSYWRPWCQFIGGRSTLCWKTTRKNYLQDHG 535
LLI +D H +W W QF G W + +L++HG
Sbjct: 280 LLIWKDPKHGHW--WLQFGSGTLVGYWPVSLFTHLREHG 316
>At1g23340.1 68414.m02918 expressed protein similar to At1g70550,
At1g10750 contains Pfam profile PF03080: Arabidopsis
proteins of unknown function
Length = 409
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +2
Query: 419 LLI*RDHGHSYWRPWCQFIGGRSTLCWKTTRKNYLQDHG 535
LLI +D H +W W QF G W + +L++HG
Sbjct: 280 LLIWKDPKHGHW--WLQFGSGTLVGYWPVSLFTHLREHG 316
>At5g61230.1 68418.m07680 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 174
Score = 29.1 bits (62), Expect = 4.3
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = +3
Query: 426 SKGIMGIHIGDHGASLLVVDPHYVGKQPVKIIYKTMGWVKWQPLH 560
SKG+ +H+ G + V+D + ++ I KT G W PLH
Sbjct: 64 SKGVSALHLAAEGGHIEVMD--LLLERGANIDAKTWGSCGWTPLH 106
>At1g49270.1 68414.m05524 protein kinase family protein contains
Pfam domain PF00069: Protein kinase domain
Length = 699
Score = 27.9 bits (59), Expect = 9.9
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -3
Query: 151 ARNISSEEFYNRNPSPYRQIHHTSNDNIHN 62
A +++YN+N + +Q H+ ND+I N
Sbjct: 220 AGKTGGDQYYNQNAATQQQQHYNQNDHIVN 249
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,414,421
Number of Sequences: 28952
Number of extensions: 374845
Number of successful extensions: 826
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2159049456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -