Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0450.Seq
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ... 164 2e-41
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p... 163 2e-41
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M... 136 3e-33
SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyce... 104 2e-23
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc... 97 3e-21
SPAC3F10.16c |||GTP binding protein, HSR1-related|Schizosaccharo... 30 0.38
SPBC16C6.05 |||translation initiation factor |Schizosaccharomyce... 28 1.5
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 27 2.7
SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomy... 27 4.7
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 26 8.2
>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 644
Score = 164 bits (398), Expect = 2e-41
Identities = 81/112 (72%), Positives = 89/112 (79%)
Frame = +3
Query: 255 NQPGVLIQVFEGERAXTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAXEK 434
NQPGVLIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA EK
Sbjct: 432 NQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEK 491
Query: 435 STNKENKITIXNDKGRLSKEEIERMLMRQRSTETRMTSKRRPSRAKNALESY 590
T K KITI NDKGRLSKEEI+RM+ + ++ +AKN LESY
Sbjct: 492 GTGKTQKITITNDKGRLSKEEIDRMVSEAEKYKAEDEAETSRIQAKNHLESY 543
Score = 70.1 bits (164), Expect = 4e-13
Identities = 38/69 (55%), Positives = 40/69 (57%)
Frame = +1
Query: 1 LLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGG 180
L+ DFFNGKE KSINPDE IL GD SE+ QD GIETAGG
Sbjct: 347 LVSDFFNGKEPCKSINPDEAVAYGAAVQAAILVGDTSEKTQDLLLLDVAPLSLGIETAGG 406
Query: 181 VMTTLIKRN 207
VMT LIKRN
Sbjct: 407 VMTPLIKRN 415
>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 647
Score = 163 bits (397), Expect = 2e-41
Identities = 81/112 (72%), Positives = 89/112 (79%)
Frame = +3
Query: 255 NQPGVLIQVFEGERAXTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAXEK 434
NQPGVLIQVFEGERA TKD NLLGKFEL+GIPPAPRGVPQIEVTFD+DANGILNVSA EK
Sbjct: 432 NQPGVLIQVFEGERARTKDCNLLGKFELSGIPPAPRGVPQIEVTFDVDANGILNVSALEK 491
Query: 435 STNKENKITIXNDKGRLSKEEIERMLMRQRSTETRMTSKRRPSRAKNALESY 590
T K KITI NDKGRLSKEEI+RM+ + ++ +AKN LESY
Sbjct: 492 GTGKTQKITITNDKGRLSKEEIDRMVAEAEKYKAEDEAESGRIQAKNHLESY 543
Score = 70.1 bits (164), Expect = 4e-13
Identities = 37/69 (53%), Positives = 40/69 (57%)
Frame = +1
Query: 1 LLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGG 180
L+ DFFNGKE KSINPDE +L GD SE+ QD GIETAGG
Sbjct: 347 LVSDFFNGKEPCKSINPDEAVAYGAAVQAAVLTGDTSEKTQDLLLLDVAPLSMGIETAGG 406
Query: 181 VMTTLIKRN 207
VMT LIKRN
Sbjct: 407 VMTPLIKRN 415
>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
1|||Manual
Length = 663
Score = 136 bits (330), Expect = 3e-33
Identities = 68/113 (60%), Positives = 81/113 (71%), Gaps = 1/113 (0%)
Frame = +3
Query: 255 NQPGVLIQVFEGERAXTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAXEK 434
NQ VLIQV+EGER TKDNNLLGKF+L GIPPAPRGVPQIEVTF++DANG+L VSA +K
Sbjct: 461 NQNTVLIQVYEGERTLTKDNNLLGKFDLRGIPPAPRGVPQIEVTFEVDANGVLTVSAVDK 520
Query: 435 S-TNKENKITIXNDKGRLSKEEIERMLMRQRSTETRMTSKRRPSRAKNALESY 590
S K K+ I NDKGRLS+E+IERM+ + A+N LE+Y
Sbjct: 521 SGKGKPEKLVIKNDKGRLSEEDIERMVKEAEEFAEEDKILKERIEARNTLENY 573
Score = 44.8 bits (101), Expect = 2e-05
Identities = 27/69 (39%), Positives = 35/69 (50%)
Frame = +1
Query: 1 LLQDFFNGKELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGG 180
LL+ FF GK+ +K INPDE +L G++ + + GIET GG
Sbjct: 379 LLESFF-GKKASKGINPDEAVAYGAAVQAGVLSGEEGSD--NIVLLDVIPLTLGIETTGG 435
Query: 181 VMTTLIKRN 207
VMT LI RN
Sbjct: 436 VMTKLIGRN 444
Score = 25.8 bits (54), Expect = 8.2
Identities = 28/94 (29%), Positives = 40/94 (42%), Gaps = 3/94 (3%)
Frame = +2
Query: 509 VNEAEKYRNEDDKQKETIQGQECIGILLASA*SLPWRMRSSRKRSLTLDX---QTILDKC 679
V EAE++ ED KE I+ + L A SL + + +D Q +LD
Sbjct: 547 VKEAEEFAEEDKILKERIEARNT---LENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAV 603
Query: 680 KXTIQVAGFQPAWPTKEEFEXQAGKXLEAFTIPI 781
+ + +KEEFE Q K L+A PI
Sbjct: 604 EDVAEWLEIHGEDASKEEFEDQRQK-LDAVVHPI 636
>SPAC664.11 |ssc1|ssp1|Hsp70 chaperone mtHsp70|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 674
Score = 104 bits (249), Expect = 2e-23
Identities = 48/85 (56%), Positives = 65/85 (76%)
Frame = +3
Query: 258 QPGVLIQVFEGERAXTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAXEKS 437
Q V I+VF+GER +DN L+G F+LTGI PAP+G PQIEV+FD+DA+GI+NVSA +K+
Sbjct: 476 QTAVEIRVFQGERELVRDNKLIGNFQLTGIAPAPKGQPQIEVSFDVDADGIINVSARDKA 535
Query: 438 TNKENKITIXNDKGRLSKEEIERML 512
TNK++ IT+ G L+ EIE M+
Sbjct: 536 TNKDSSITVAGSSG-LTDSEIEAMV 559
Score = 36.3 bits (80), Expect = 0.006
Identities = 23/61 (37%), Positives = 27/61 (44%)
Frame = +1
Query: 25 KELNKSINPDEXXXXXXXXXXXILHGDKSEEVQDXXXXXXXXXXXGIETAGGVMTTLIKR 204
+E KS+NPDE +L G V+D GIET GGV T LI R
Sbjct: 402 REPAKSVNPDEAVAIGAAIQGGVLSG----HVKDLVLLDVTPLSLGIETLGGVFTRLINR 457
Query: 205 N 207
N
Sbjct: 458 N 458
>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 613
Score = 97.1 bits (231), Expect = 3e-21
Identities = 48/112 (42%), Positives = 67/112 (59%)
Frame = +3
Query: 255 NQPGVLIQVFEGERAXTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAXEK 434
NQ V V++GER +N LG+F+LTGIPP PRG ++E TF++DANGIL V+A EK
Sbjct: 437 NQTTVTFPVYQGERVNCAENEPLGEFQLTGIPPMPRGQAELEATFELDANGILKVTAVEK 496
Query: 435 STNKENKITIXNDKGRLSKEEIERMLMRQRSTETRMTSKRRPSRAKNALESY 590
+T + I I N G LS +I+ M+ + + + AK+ LESY
Sbjct: 497 TTGRSAHIEITNSVGHLSSTKIQEMIENADKFKQQDKDFAKKLEAKSQLESY 548
Score = 40.3 bits (90), Expect = 4e-04
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 1/70 (1%)
Frame = +1
Query: 1 LLQDFFNGKELNKSINPDEXXXXXXXXXXXIL-HGDKSEEVQDXXXXXXXXXXXGIETAG 177
L+ DFF+G+ LNKSINPDE +L + S++ QD G+ G
Sbjct: 351 LVSDFFDGRALNKSINPDEAVAYGAAVQAAVLTNKADSDKTQDLLLLDVVPLSLGVAMEG 410
Query: 178 GVMTTLIKRN 207
V + RN
Sbjct: 411 NVFGVVCPRN 420
>SPAC3F10.16c |||GTP binding protein,
HSR1-related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 616
Score = 30.3 bits (65), Expect = 0.38
Identities = 22/66 (33%), Positives = 30/66 (45%), Gaps = 6/66 (9%)
Frame = +3
Query: 381 VTFDIDANGILNVSAX---EKSTNKENKITIXNDKGR---LSKEEIERMLMRQRSTETRM 542
VT + D + LN + E K+N I N + LSKEE R +Q + R+
Sbjct: 49 VTHETDLDEFLNTAELGEVEFIAEKQNVTVIQNPEQNPFLLSKEEAARSKQKQEKNKDRL 108
Query: 543 TSKRRP 560
T RRP
Sbjct: 109 TIPRRP 114
>SPBC16C6.05 |||translation initiation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 190
Score = 28.3 bits (60), Expect = 1.5
Identities = 14/54 (25%), Positives = 25/54 (46%)
Frame = +3
Query: 396 DANGILNVSAXEKSTNKENKITIXNDKGRLSKEEIERMLMRQRSTETRMTSKRR 557
D LNVS + S +E + ++ R+ +EE +RM + T ++R
Sbjct: 58 DLENTLNVSGTKDSNAEEQPAKLTKEEKRVEREEAKRMASKVLIKTIERTKRKR 111
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = +1
Query: 808 PKNSPEVXPGFPGXGXPXPXSFPPP 882
P SP P P P P S PPP
Sbjct: 150 PPPSPASAPPIPSKAPPIPSSLPPP 174
>SPAC2C4.15c |ubx2|ucp13|UBX domain protein Ubx2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 26.6 bits (56), Expect = 4.7
Identities = 15/27 (55%), Positives = 15/27 (55%)
Frame = -1
Query: 421 ETLRIPLASMSKVTSI*GTPRGAGGIP 341
E L PLA MS TSI G G GG P
Sbjct: 76 EVLVDPLADMSAGTSIMGNNFGFGGFP 102
>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 381
Score = 25.8 bits (54), Expect = 8.2
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 1/42 (2%)
Frame = +2
Query: 404 RYPQRFRYXEVHQQGEQDHHXQRQRSS-LQGRDRAYVNEAEK 526
R P R +Y E H + + H R QGR +Y + +
Sbjct: 320 RDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSYKKRSHR 361
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,097,465
Number of Sequences: 5004
Number of extensions: 53872
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -