Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0450.Seq
         (886 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.9  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   4.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = +1

Query: 808 PKNSPEVXPGFPGXGXPXPXS-FPPPG 885
           P+ SP   P  P  G P   S  PPPG
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPG 49


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/46 (15%), Positives = 25/46 (54%)
 Frame = +2

Query: 437 HQQGEQDHHXQRQRSSLQGRDRAYVNEAEKYRNEDDKQKETIQGQE 574
           H+Q  ++   +++   ++ R+R     +++  ++  +Q++  Q Q+
Sbjct: 56  HRQHSKNEQQRKEMEQMREREREQREHSDRVTSQQQQQQQQQQQQD 101


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 221,898
Number of Sequences: 438
Number of extensions: 4725
Number of successful extensions: 7
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)