Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0447.Seq
         (683 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc...    38   0.001
SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual           27   1.9  
SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyce...    27   3.3  

>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 587

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 13/38 (34%), Positives = 28/38 (73%)
 Frame = +1

Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
           ++P+ NF+G L+GP G+T+  ++  +  ++A+ G+GS+
Sbjct: 196 DYPEINFIGLLIGPRGHTLKDMEAKSGAKIAIRGKGSV 233


>SPAC23H4.04 |||tRNA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 415

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 326 YRLVVVSPRTQNMWMCSVTNQPKSQLKFLCQLR-NILNSTLWENY*VXKETL 478
           Y   VV+  T    MC  T++ K Q  FLC +R   L  T++  +   KE +
Sbjct: 161 YAKSVVNIETNESHMCIPTDKRKDQTLFLCTIRKEALEKTIFPLHNWTKENV 212


>SPBC1703.11 |||optic atrophy 3 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 218

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 152 KRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLTRRSNSIIQN 283
           K+N  Q   EE+D   ++  ++++   +  REL T R N+  QN
Sbjct: 141 KKNELQSSTEEIDSTEKDFDELHKVILKVERELHTLRQNTPSQN 184


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,123,504
Number of Sequences: 5004
Number of extensions: 35079
Number of successful extensions: 72
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 72
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)