Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0447.Seq
(683 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0342 - 20425141-20425311,20425415-20425558,20426506-204266... 46 4e-05
01_06_1593 + 38502884-38502993,38503580-38503665,38504352-385044... 44 9e-05
07_01_0861 + 7152976-7153061,7153222-7153310,7154862-7155013,715... 42 3e-04
02_05_0567 + 30029862-30030136,30030299-30030384,30031663-300318... 42 3e-04
05_05_0237 - 23526613-23527178,23527979-23528066,23528384-235285... 42 5e-04
01_06_1141 + 34845834-34845931,34846110-34846198,34846535-348466... 41 8e-04
04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066 41 0.001
03_06_0443 + 33973229-33973311,33973422-33973510,33974873-339750... 41 0.001
08_01_0005 + 47929-48201,48663-48788,49009-49054,49188-49270,496... 31 0.85
>05_04_0342 -
20425141-20425311,20425415-20425558,20426506-20426622,
20426719-20426835,20427533-20427678,20428208-20428293,
20428780-20428889
Length = 296
Score = 45.6 bits (103), Expect = 4e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLAD 603
++P +NFVG+LLGP GN++ ++ T ++ + GRGS+ LR P HL D
Sbjct: 150 KYPNYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLRD--KPGYEHLND 207
>01_06_1593 +
38502884-38502993,38503580-38503665,38504352-38504497,
38504817-38504933,38505028-38505144,38505858-38506001,
38506099-38506251
Length = 290
Score = 44.4 bits (100), Expect = 9e-05
Identities = 21/58 (36%), Positives = 33/58 (56%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHL 597
++P +NFVG+LLGP GN++ ++ T ++ + GRGS+ LR P HL
Sbjct: 150 KYPNYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRD--KPGYEHL 205
>07_01_0861 +
7152976-7153061,7153222-7153310,7154862-7155013,
7155254-7155382,7155465-7155581,7156353-7156496,
7156749-7156851,7157471-7157565,7157953-7158096
Length = 352
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/59 (33%), Positives = 33/59 (55%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLAD 603
+P FNFVG++LGP GN++ ++ T ++ + G+GS+ L+ P HL D
Sbjct: 150 YPNFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSIKDADKEEKLK--GKPGYEHLND 206
>02_05_0567 +
30029862-30030136,30030299-30030384,30031663-30031811,
30032581-30032685,30032779-30032895,30033251-30033394,
30033519-30033668
Length = 341
Score = 42.3 bits (95), Expect = 3e-04
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
++P FNFVG++LGP GN++ ++ T ++ + GRGS+
Sbjct: 202 KYPTFNFVGRILGPRGNSLKRVEATTDCRVLIRGRGSI 239
>05_05_0237 -
23526613-23527178,23527979-23528066,23528384-23528527,
23528674-23528790,23528860-23528970,23530911-23531062,
23531362-23531450,23531664-23531761
Length = 454
Score = 41.9 bits (94), Expect = 5e-04
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
+P FNF+G+LLGP GN++ ++ T ++ + G+GS+
Sbjct: 148 YPNFNFIGRLLGPRGNSLKRIEASTGCRVFIRGKGSI 184
>01_06_1141 +
34845834-34845931,34846110-34846198,34846535-34846686,
34847473-34847583,34847702-34847818,34847989-34848156,
34848563-34848703
Length = 291
Score = 41.1 bits (92), Expect = 8e-04
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
+P FNF+G+LLGP GN++ ++ T ++ + G+GS+
Sbjct: 148 YPHFNFIGRLLGPRGNSLKRVEASTGCRVFIRGKGSI 184
>04_03_0711 + 18945012-18945692,18945790-18946845,18946863-18947066
Length = 646
Score = 40.7 bits (91), Expect = 0.001
Identities = 14/38 (36%), Positives = 27/38 (71%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
E P +NF+G ++GP GNT ++++T ++ + G+GS+
Sbjct: 105 EFPGYNFIGLIIGPRGNTQKRMEKETGAKIVIRGKGSV 142
>03_06_0443 +
33973229-33973311,33973422-33973510,33974873-33975024,
33975463-33975579,33975729-33975776,33976169-33976312,
33976715-33976858
Length = 258
Score = 40.7 bits (91), Expect = 0.001
Identities = 15/37 (40%), Positives = 27/37 (72%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
H +FNFVG++LGP GN++ ++ T ++ + G+GS+
Sbjct: 106 HQEFNFVGRILGPRGNSLKRVEASTGCRVFIRGKGSI 142
>08_01_0005 +
47929-48201,48663-48788,49009-49054,49188-49270,
49651-49728,49831-49884,50004-50138,50222-51691
Length = 754
Score = 31.1 bits (67), Expect = 0.85
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLG 525
+P N +G L+GP N LQE+T ++ V G
Sbjct: 180 YPGHNIIGVLMGPESNAQKRLQEETGAKIRVYG 212
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,386,827
Number of Sequences: 37544
Number of extensions: 201726
Number of successful extensions: 326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 324
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 326
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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