Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0447.Seq
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)              69   3e-12
SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   4e-06
SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)               31   0.87 
SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)                  31   0.87 
SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.1  
SB_27837| Best HMM Match : Vicilin_N (HMM E-Value=0.85)                28   8.1  

>SB_24945| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 336

 Score = 69.3 bits (162), Expect = 3e-12
 Identities = 31/60 (51%), Positives = 39/60 (65%)
 Frame = +1

Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLAD 603
           +HPKFNFVGKLLGP GNT   LQ  T  +M++LG+GSM  +     LR    PK +HL +
Sbjct: 111 DHPKFNFVGKLLGPRGNTFKRLQNSTGTKMSILGKGSMRDKEKEEELRATEDPKYAHLGE 170


>SB_35885| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 476

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 24/91 (26%), Positives = 46/91 (50%)
 Frame = +1

Query: 265 KLNNSKFPLSMKLIDQEVTXVQASGRITKDSKYVDVFRDXXXXXXXXXXXXXXEHPKFNF 444
           +LN   F +  +L D+    +Q   +I  D K    ++               E+P+ NF
Sbjct: 58  RLNTRDFRVRKRLEDERHKFIQDMMKINPDFKPPADYKPPLIKIQDKVMIPQDENPEVNF 117

Query: 445 VGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
           +G L+GP GNT+  ++++T  ++ + G+GS+
Sbjct: 118 IGLLIGPRGNTLKNMEKETNAKIMIRGKGSI 148


>SB_20363| Best HMM Match : Involucrin (HMM E-Value=0.31)
          Length = 353

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 113 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 223
           D    NG+ SGD + ++T GKP + +   E G KI +
Sbjct: 11  DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 47


>SB_10643| Best HMM Match : ShTK (HMM E-Value=2.9e-23)
          Length = 2123

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 113 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINE 223
           D    NG+ SGD + ++T GKP + +   E G KI +
Sbjct: 289 DDSKANGHMSGDSQSSSTSGKPSQQESQTELGQKIEK 325


>SB_19708| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1548

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 14/40 (35%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +2

Query: 92  FDLIKMADKYDKNGYNSGDFKRNTTQGK-PEELDQNGEEG 208
           F  +     YD  G  S D ++ TT+GK PE + +N ++G
Sbjct: 659 FQTLDRKGGYDNPGQASDDDEKETTRGKAPEPIYENTKDG 698


>SB_27837| Best HMM Match : Vicilin_N (HMM E-Value=0.85)
          Length = 206

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +2

Query: 104 KMADKYDKNGYNSGDFKRNTTQGKPEELDQNGEE-----GIKINEKAGEYMRELLTR 259
           K  ++++K      D ++   +   E +D+  +E      +K+NE  GEY REL+ R
Sbjct: 146 KEKEEFEKQRKLKEDKQKEIEEKINEWIDKKNKEILKMPTLKVNESTGEYRRELVNR 202


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,854,169
Number of Sequences: 59808
Number of extensions: 253261
Number of successful extensions: 475
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 425
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 475
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)