Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0447.Seq
(683 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna bin... 49 3e-06
AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna bin... 49 3e-06
AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna bin... 49 3e-06
AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical ... 48 8e-06
AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical ... 48 8e-06
Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical pr... 46 3e-05
U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein. 46 3e-05
AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical... 42 4e-04
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 40 0.001
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 40 0.001
Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical p... 38 0.007
AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical ... 37 0.015
Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical pr... 30 1.8
D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein. 30 1.8
AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha... 30 1.8
AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha... 30 1.8
U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical p... 29 2.3
Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical p... 27 9.4
Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical p... 27 9.4
>AF000197-8|AAB52897.2| 328|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform a protein.
Length = 328
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLAD 603
EHP +NFVG++LGP G T L+++T ++ V GRGSM + R P HL++
Sbjct: 98 EHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNR--GKPNWEHLSE 155
>AF000197-7|AAU20839.1| 445|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform c protein.
Length = 445
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLAD 603
EHP +NFVG++LGP G T L+++T ++ V GRGSM + R P HL++
Sbjct: 140 EHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNR--GKPNWEHLSE 197
>AF000197-6|AAP68907.1| 403|Caenorhabditis elegans Star (rna
binding protein) familyprotein 2, isoform b protein.
Length = 403
Score = 49.2 bits (112), Expect = 3e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLAD 603
EHP +NFVG++LGP G T L+++T ++ V GRGSM + R P HL++
Sbjct: 98 EHPDYNFVGRILGPRGMTAKQLEQETGCKIMVRGRGSMRDKKKEELNR--GKPNWEHLSE 155
>AF106574-2|AAM81088.1| 315|Caenorhabditis elegans Hypothetical
protein E02D9.1b protein.
Length = 315
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLA 600
HP FNF+GK+LGP G T+ L + + +LGRGS R L P+ +H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFS 197
>AF106574-1|AAY44015.1| 317|Caenorhabditis elegans Hypothetical
protein E02D9.1c protein.
Length = 317
Score = 47.6 bits (108), Expect = 8e-06
Identities = 22/58 (37%), Positives = 31/58 (53%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLA 600
HP FNF+GK+LGP G T+ L + + +LGRGS R L P+ +H +
Sbjct: 140 HPNFNFIGKVLGPKGATLQTLCKTHKCHIYILGRGSTKDREKEAELLASGDPQHAHFS 197
>Z81130-2|CAB03417.1| 463|Caenorhabditis elegans Hypothetical
protein T23G11.3 protein.
Length = 463
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
E+P +NFVG++LGP G T L++DT ++ V G+GSM
Sbjct: 215 EYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSM 252
>U20535-1|AAC46632.1| 463|Caenorhabditis elegans gld-1 protein.
Length = 463
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
E+P +NFVG++LGP G T L++DT ++ V G+GSM
Sbjct: 215 EYPDYNFVGRILGPRGMTAKQLEQDTGCKIMVRGKGSM 252
>AC084158-25|AAM15620.2| 384|Caenorhabditis elegans Hypothetical
protein Y69A2AR.32a protein.
Length = 384
Score = 41.9 bits (94), Expect = 4e-04
Identities = 17/37 (45%), Positives = 28/37 (75%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGS 534
++PK+NFVG++LGP G T+ L+++T ++ V GR S
Sbjct: 81 KYPKYNFVGRILGPRGMTVKQLEKETGCRIFVRGRAS 117
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
+ P NFVG L+GP GNT+ L+ +T ++ + G+GS+
Sbjct: 313 QFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSI 350
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 40.3 bits (90), Expect = 0.001
Identities = 16/38 (42%), Positives = 26/38 (68%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
+ P NFVG L+GP GNT+ L+ +T ++ + G+GS+
Sbjct: 313 QFPDLNFVGLLIGPRGNTLKSLEAETGAKIIIRGKGSI 350
>Z99281-18|CAD56258.1| 380|Caenorhabditis elegans Hypothetical
protein Y57G11C.36 protein.
Length = 380
Score = 37.9 bits (84), Expect = 0.007
Identities = 16/33 (48%), Positives = 22/33 (66%)
Frame = +1
Query: 430 PKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGR 528
P +NFVG+LLGP G T L+ T ++ +LGR
Sbjct: 124 PDYNFVGRLLGPRGTTAKQLEVTTGCRITILGR 156
>AF047659-9|AAC04421.1| 254|Caenorhabditis elegans Hypothetical
protein K07H8.9 protein.
Length = 254
Score = 36.7 bits (81), Expect = 0.015
Identities = 13/36 (36%), Positives = 24/36 (66%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGS 534
+P +NF+G+++GP G T L++DT ++ + G S
Sbjct: 132 YPTYNFIGRIIGPRGTTAKQLEKDTGCRIMIRGNHS 167
>Z70286-6|CAA94293.1| 3672|Caenorhabditis elegans Hypothetical protein
K08C7.3b protein.
Length = 3672
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 116 KYDKNGYNSGDFKRNTTQGKPEELDQNGEE-GIKINEKAGEYMRELLTRRSNSIIQ 280
KY KN +S D K + E+D N EE KI+E AG+ E +T ++NS ++
Sbjct: 2576 KYSKNTLDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK--AEEITEKANSAME 2629
>Z70286-5|CAB61016.1| 3704|Caenorhabditis elegans Hypothetical protein
K08C7.3a protein.
Length = 3704
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 116 KYDKNGYNSGDFKRNTTQGKPEELDQNGEE-GIKINEKAGEYMRELLTRRSNSIIQ 280
KY KN +S D K + E+D N EE KI+E AG+ E +T ++NS ++
Sbjct: 2576 KYSKNTLDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK--AEEITEKANSAME 2629
>D83173-1|BAA11828.1| 1518|Caenorhabditis elegans laminin A protein.
Length = 1518
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 116 KYDKNGYNSGDFKRNTTQGKPEELDQNGEE-GIKINEKAGEYMRELLTRRSNSIIQ 280
KY KN +S D K + E+D N EE KI+E AG+ E +T ++NS ++
Sbjct: 390 KYSKNTLDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK--AEEITEKANSAME 443
>AB016806-1|BAA32347.1| 3704|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3704
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 116 KYDKNGYNSGDFKRNTTQGKPEELDQNGEE-GIKINEKAGEYMRELLTRRSNSIIQ 280
KY KN +S D K + E+D N EE KI+E AG+ E +T ++NS ++
Sbjct: 2576 KYSKNTLDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK--AEEITEKANSAME 2629
>AB001074-1|BAA19229.1| 3704|Caenorhabditis elegans laminin alpha
protein.
Length = 3704
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Frame = +2
Query: 116 KYDKNGYNSGDFKRNTTQGKPEELDQNGEE-GIKINEKAGEYMRELLTRRSNSIIQ 280
KY KN +S D K + E+D N EE KI+E AG+ E +T ++NS ++
Sbjct: 2576 KYSKNTLDSIDEKVQEVEKLKAEIDANIEETRAKISEIAGK--AEEITEKANSAME 2629
>U10438-13|ABB88243.1| 235|Caenorhabditis elegans Hypothetical
protein B0280.17 protein.
Length = 235
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 21/31 (67%)
Frame = +1
Query: 439 NFVGKLLGPXGNTMXXLQEDTLXQMAVLGRG 531
N VG+L+GP G T+ L++D ++ + G+G
Sbjct: 129 NPVGRLIGPRGMTIRQLEKDLGCKLFIRGKG 159
>Z77132-1|CAB00859.1| 278|Caenorhabditis elegans Hypothetical
protein F54D1.1 protein.
Length = 278
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/46 (23%), Positives = 24/46 (52%)
Frame = +1
Query: 433 KFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQ 570
K N++G++LGP G + ++ + + G GS+ + +R+
Sbjct: 151 KCNYIGRILGPSGMSARMIENQYDVTLLIRGAGSVRNKAMDERVRK 196
>Z66500-14|CAA91313.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 125 KNGYNSGDFKRNTTQGKPEELDQNGE-EGIKINEKAG 232
K+G SGD K N G + D+NG+ G N+K+G
Sbjct: 683 KSGDGSGDGKNNGNGGTGDGKDKNGKGSGSGDNDKSG 719
>Z49968-13|CAA90265.2| 1169|Caenorhabditis elegans Hypothetical
protein T05C12.10 protein.
Length = 1169
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
Frame = +2
Query: 125 KNGYNSGDFKRNTTQGKPEELDQNGE-EGIKINEKAG 232
K+G SGD K N G + D+NG+ G N+K+G
Sbjct: 683 KSGDGSGDGKNNGNGGTGDGKDKNGKGSGSGDNDKSG 719
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,936,494
Number of Sequences: 27780
Number of extensions: 199215
Number of successful extensions: 411
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 411
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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