Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0447.Seq
(683 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g56140.1 68418.m07003 KH domain-containing protein 44 1e-04
At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus... 43 2e-04
At2g38610.2 68415.m04743 KH domain-containing protein 42 4e-04
At2g38610.1 68415.m04742 KH domain-containing protein 42 4e-04
At3g08620.1 68416.m01001 KH domain-containing protein 42 5e-04
At1g09660.2 68414.m01085 KH domain-containing quaking protein, p... 41 9e-04
At1g09660.1 68414.m01084 KH domain-containing quaking protein, p... 41 9e-04
At5g51300.2 68418.m06360 splicing factor-related contains simila... 40 0.001
At5g51300.1 68418.m06359 splicing factor-related contains simila... 40 0.001
At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transfera... 30 1.2
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 29 3.8
At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transfera... 28 5.0
At5g16720.1 68418.m01958 expressed protein contains Pfam profile... 28 6.6
At5g24880.1 68418.m02946 expressed protein ; expression supporte... 27 8.8
At3g32940.1 68416.m04174 expressed protein 27 8.8
>At5g56140.1 68418.m07003 KH domain-containing protein
Length = 315
Score = 43.6 bits (98), Expect = 1e-04
Identities = 17/37 (45%), Positives = 27/37 (72%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
+P FNFVG+LLGP GN++ ++ T ++ + GRGS+
Sbjct: 177 YPNFNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSI 213
>At4g26480.1 68417.m03810 KH domain-containing protein qkI-7, Mus
musculus
Length = 555
Score = 42.7 bits (96), Expect = 2e-04
Identities = 16/38 (42%), Positives = 28/38 (73%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
++P +NFVG+LLGP GN++ ++ T ++ + GRGS+
Sbjct: 417 KYPNYNFVGRLLGPRGNSLKRVEASTDCRVLIRGRGSI 454
>At2g38610.2 68415.m04743 KH domain-containing protein
Length = 286
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHL 597
+P FNFVG+LLGP GN++ ++ T ++ + G+GS+ LR P HL
Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLR--GRPGYEHL 201
>At2g38610.1 68415.m04742 KH domain-containing protein
Length = 286
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/57 (36%), Positives = 32/57 (56%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHL 597
+P FNFVG+LLGP GN++ ++ T ++ + G+GS+ LR P HL
Sbjct: 147 YPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGKGSIKDPEKEDKLR--GRPGYEHL 201
>At3g08620.1 68416.m01001 KH domain-containing protein
Length = 283
Score = 41.5 bits (93), Expect = 5e-04
Identities = 16/37 (43%), Positives = 27/37 (72%)
Frame = +1
Query: 427 HPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
+P FNFVG+LLGP GN++ ++ T ++ + G+GS+
Sbjct: 146 YPNFNFVGRLLGPRGNSLKRVEATTGCRVYIRGKGSI 182
>At1g09660.2 68414.m01085 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 264
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLAD 603
++P +NFVG++LGP GN++ ++ T ++ + GRGS+ L+ P HL +
Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLK--GKPGYEHLCE 214
>At1g09660.1 68414.m01084 KH domain-containing quaking protein,
putative similar to GB:AAC67357
Length = 298
Score = 40.7 bits (91), Expect = 9e-04
Identities = 19/60 (31%), Positives = 34/60 (56%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSMXXRXXXXXLRQXXXPKXSHLAD 603
++P +NFVG++LGP GN++ ++ T ++ + GRGS+ L+ P HL +
Sbjct: 157 KYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLK--GKPGYEHLCE 214
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
E P +NF+G ++GP GNT ++ +T ++ + G+GS+
Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV 288
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 40.3 bits (90), Expect = 0.001
Identities = 14/38 (36%), Positives = 26/38 (68%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLGRGSM 537
E P +NF+G ++GP GNT ++ +T ++ + G+GS+
Sbjct: 251 EFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSV 288
>At1g22400.1 68414.m02801 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 489
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = +2
Query: 113 DKYDKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMR 244
D++D GD KR + EL +GE+G K+ EKA E+ R
Sbjct: 415 DEWDVGIEIGGDVKREEVEAVVREL-MDGEKGKKMREKAVEWQR 457
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 28.7 bits (61), Expect = 3.8
Identities = 10/42 (23%), Positives = 20/42 (47%)
Frame = +2
Query: 350 RTQNMWMCSVTNQPKSQLKFLCQLRNILNSTLWENY*VXKET 475
+TQ +W C++ + F+C + +L + N + K T
Sbjct: 47 KTQGLWRCAICTYDNVETMFVCDICGVLRHPVAGNQSINKNT 88
>At1g22380.1 68414.m02799 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 467
Score = 28.3 bits (60), Expect = 5.0
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = +2
Query: 143 GDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMR 244
GD KR + EL +GE+G K+ EKA E+ R
Sbjct: 403 GDVKRGEVEAVVREL-MDGEKGKKMREKAVEWRR 435
>At5g16720.1 68418.m01958 expressed protein contains Pfam profile
PF04576: Protein of unknown function, DUF593
Length = 675
Score = 27.9 bits (59), Expect = 6.6
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Frame = +2
Query: 122 DKNGYNSGDFKRNTTQGKPEELDQNGEEGIKINEKAGEYMRELLTRRS-NSIIQN 283
D+ Y G F+ +GK ++ QNGE I E G +RE+ SII N
Sbjct: 178 DRESYPLGFFRDKAEEGKKQDQQQNGEV-ISDVESYGLSLREVSEEDGLRSIISN 231
>At5g24880.1 68418.m02946 expressed protein ; expression supported
by MPSS
Length = 443
Score = 27.5 bits (58), Expect = 8.8
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +2
Query: 161 TTQGKPEELDQNGEEGIKINEKAGEYMRE 247
TTQ K EE+ + G+E ++ EK E ++E
Sbjct: 331 TTQEKEEEVKEEGKERVEEEEKEKEKVKE 359
>At3g32940.1 68416.m04174 expressed protein
Length = 607
Score = 27.5 bits (58), Expect = 8.8
Identities = 10/34 (29%), Positives = 20/34 (58%)
Frame = +1
Query: 424 EHPKFNFVGKLLGPXGNTMXXLQEDTLXQMAVLG 525
EH F+F+ + G G+T L+++T ++ + G
Sbjct: 143 EHSDFSFLSLIFGSQGDTQKRLEKETGAKVQIFG 176
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,035,129
Number of Sequences: 28952
Number of extensions: 177176
Number of successful extensions: 305
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 301
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 305
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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