Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0444.Seq
(612 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo... 132 4e-32
SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch... 132 5e-32
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 29 0.70
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 2.1
SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomy... 26 3.7
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|... 25 6.5
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 25 8.6
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy... 25 8.6
SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomy... 25 8.6
>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 132 bits (319), Expect = 4e-32
Identities = 65/98 (66%), Positives = 74/98 (75%)
Frame = +2
Query: 11 RVRLLMSKGHSCYRPRRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTDGNVPR 190
RVRLL+ GH CYRPRRDG RKRKSVRGCI +L+VLAL IV++G Q+IPGLTD VP+
Sbjct: 72 RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIVKQGEQDIPGLTDVTVPK 131
Query: 191 RLGPKRASKIRKLFNLSKEDDDVVMSSNACSQPRKEKK 304
RLGPKRASKIR+ FNLSKEDD P+KE K
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169
Score = 56.0 bits (129), Expect = 4e-09
Identities = 35/83 (42%), Positives = 49/83 (59%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 YVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYA 438
+V++R V+P KEGK KP KAPKIQRLVTP LQ AE+A
Sbjct: 156 FVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFA 212
Query: 439 KLLAQRKKESKVRRQEEIKRRRS 507
+L+A+R E+K +++E +K RR+
Sbjct: 213 QLMAKRVAEAK-QKKEVVKARRA 234
>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
S6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 239
Score = 132 bits (318), Expect = 5e-32
Identities = 64/98 (65%), Positives = 74/98 (75%)
Frame = +2
Query: 11 RVRLLMSKGHSCYRPRRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTDGNVPR 190
RVRLL+ GH CYRPRRDG RKRKSVRGCI +L+VLAL I+++G Q+IPGLTD VP+
Sbjct: 72 RVRLLLRAGHPCYRPRRDGERKRKSVRGCIVGQDLAVLALAIIKQGEQDIPGLTDVTVPK 131
Query: 191 RLGPKRASKIRKLFNLSKEDDDVVMSSNACSQPRKEKK 304
RLGPKRASKIR+ FNLSKEDD P+KE K
Sbjct: 132 RLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK 169
Score = 56.4 bits (130), Expect = 3e-09
Identities = 36/83 (43%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Frame = +1
Query: 262 YVVKR-VLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYA 438
+V++R V+P KEGK KP KAPKIQRLVTP LQ AE+A
Sbjct: 156 FVIRREVVPKKEGK---KPYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFA 212
Query: 439 KLLAQRKKESKVRRQEEIKRRRS 507
+L+A+R E+K +R E +K RR+
Sbjct: 213 QLMAKRVAEAKQKR-EVVKARRA 234
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 28.7 bits (61), Expect = 0.70
Identities = 15/49 (30%), Positives = 27/49 (55%)
Frame = +1
Query: 424 EAEYAKLLAQRKKESKVRRQEEIKRRRSVQCVIPRALARVLRKSDLLYF 570
E E ++L +RK+ K+ ++EE +RRR + R LR++ + F
Sbjct: 695 EEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIAAF 743
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.1 bits (57), Expect = 2.1
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 256 VIIFFAKVEQLTDFGSTFGT*TAGYISISQSRNFLGTLAHNNKSQD 119
V+I + K E + GSTFG +G R++ L H+N QD
Sbjct: 97 VVIIWHKEEAIPGLGSTFG---SGEKHTENWRSYRRLLGHDNDIQD 139
>SPCC1450.06c |grx3||monothiol glutaredoxin Grx3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 166
Score = 26.2 bits (55), Expect = 3.7
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 143 KGAQEIP-GLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMSSNACSQPRKEKKMLNPD 319
K A+ P GL+D +VP PK +K F + E+ ++ S C KK+L
Sbjct: 32 KNAKAGPLGLSDVSVPS--APKLPAKDSTDFEVFLENPVIIFSRPGCPYSAAAKKLLTET 89
Query: 320 IR 325
+R
Sbjct: 90 LR 91
>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 6.5
Identities = 11/37 (29%), Positives = 19/37 (51%)
Frame = -1
Query: 525 WNHALN*PPAFDLFLATHLGFLLSLCKQFSIFSLRGL 415
W+H + +FD F A + G LL +C+ + L +
Sbjct: 9 WHHIFDHLISFDKFEAKNFGGLLRICRSSYVGGLHAI 45
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +1
Query: 460 KESKVRRQEEIKRRRSVQCVIPRALARV 543
K +R QEE+KR +SV VI + L +
Sbjct: 38 KRELIRAQEEVKRIQSVPLVIGQFLEAI 65
>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 543
Score = 25.0 bits (52), Expect = 8.6
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Frame = -2
Query: 365 CRTTGVTSLWILGALC-LGLAFSFPSLAGS 279
C G+ W +GA C L +AF+ LA S
Sbjct: 76 CGAGGMVWSWFVGATCLLPIAFALSELASS 105
>SPAC1B3.13 |||U3 snoRNP-associated protein Nan1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 8.6
Identities = 17/70 (24%), Positives = 34/70 (48%)
Frame = +2
Query: 98 IXDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMSSNA 277
+ D NL+ +A++ K + NVP++ +R LFN+ ++ +V + +A
Sbjct: 179 LRDNNLATVAVITTDKAIFSL------NVPKKKRSQRWIHREHLFNMPQKLTNVSLCGSA 232
Query: 278 CSQPRKEKKM 307
C+ E K+
Sbjct: 233 CAVSDDEGKI 242
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,079,411
Number of Sequences: 5004
Number of extensions: 35640
Number of successful extensions: 87
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 267622334
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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