Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0444.Seq
         (612 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...   113   1e-25
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...   113   1e-25
05_07_0055 - 27374028-27374080,27374205-27374295,27374930-273754...    29   2.2  
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702...    28   5.1  
01_01_0347 + 2765517-2767109,2767214-2767228                           28   5.1  
02_02_0700 + 13058446-13058790,13059352-13059582,13060083-130602...    27   8.9  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score =  113 bits (272), Expect = 1e-25
 Identities = 56/86 (65%), Positives = 66/86 (76%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   TNSRVRLLMSKGHSCYRP--RRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTD 175
           T  RVRLL+ +G  C+R   RRDG R+RKSVRGCI   +LSV+ LVIV+KG  ++PGLTD
Sbjct: 69  TAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGENDLPGLTD 128

Query: 176 GNVPRRLGPKRASKIRKLFNLSKEDD 253
              PR  GPKRASKIRKLFNLSK+DD
Sbjct: 129 TEKPRMRGPKRASKIRKLFNLSKDDD 154



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 33/69 (47%), Positives = 38/69 (55%)
 Frame = +1

Query: 301 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRR 480
           +N K   KAPKIQRLVTP+ LQ                 S  AEY KLLAQR KE + RR
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRERR 228

Query: 481 QEEIKRRRS 507
            E + +RRS
Sbjct: 229 SESLAKRRS 237


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score =  113 bits (271), Expect = 1e-25
 Identities = 55/86 (63%), Positives = 67/86 (77%), Gaps = 2/86 (2%)
 Frame = +2

Query: 2   TNSRVRLLMSKGHSCYRP--RRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTD 175
           T+ RVRLL+ +G  C+R   RRDG R+RKSVRGCI   +LSV+ LVIV+KG  ++PGLTD
Sbjct: 69  TSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSVINLVIVKKGDNDLPGLTD 128

Query: 176 GNVPRRLGPKRASKIRKLFNLSKEDD 253
              PR  GPKRASKIRKLFNL+K+DD
Sbjct: 129 TEKPRMRGPKRASKIRKLFNLAKDDD 154



 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 33/69 (47%), Positives = 38/69 (55%)
 Frame = +1

Query: 301 ENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRR 480
           +N K   KAPKIQRLVTP+ LQ                 S  AEY KLLAQR KE + RR
Sbjct: 169 KNGKKVSKAPKIQRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRERR 228

Query: 481 QEEIKRRRS 507
            E + +RRS
Sbjct: 229 SESLAKRRS 237


>05_07_0055 -
           27374028-27374080,27374205-27374295,27374930-27375448,
           27375544-27375779,27376363-27376846,27376993-27378282
          Length = 890

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 424 EAEYAKLLAQRKKESKVRRQEEIKRRRSVQCVIPRA 531
           + E  K++ Q K+E + R+QEE+ R R    ++P A
Sbjct: 258 QEEQKKMVLQEKQEQEKRKQEELNREREELEMMPLA 293


>01_02_0020 -
           10269252-10269314,10269442-10269483,10269759-10270244,
           10270338-10270421,10270491-10270556,10270718-10270810,
           10270901-10271987,10273338-10273362,10273881-10273899
          Length = 654

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +3

Query: 447 CTEKEGIQGASPGRDQTQAV 506
           C  KE IQGA+PG  Q Q +
Sbjct: 599 CLNKEAIQGANPGDSQMQII 618


>01_01_0347 + 2765517-2767109,2767214-2767228
          Length = 535

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +2

Query: 194 LGPKRASKIRKLFNLSKEDDDVVMSSNACSQPRKE 298
           L PK A + RK F     D+D VM++N+CS   +E
Sbjct: 354 LSPKCAKR-RKDFFAHGADEDCVMANNSCSDREQE 387


>02_02_0700 +
           13058446-13058790,13059352-13059582,13060083-13060241,
           13060483-13060635,13061619-13061702,13061847-13061915,
           13062374-13062421,13062487-13062621
          Length = 407

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/40 (37%), Positives = 22/40 (55%)
 Frame = +1

Query: 424 EAEYAKLLAQRKKESKVRRQEEIKRRRSVQCVIPRALARV 543
           + EY K   +  K   +R QEE+KR +SV  VI + +  V
Sbjct: 7   QEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,338,612
Number of Sequences: 37544
Number of extensions: 261101
Number of successful extensions: 681
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 677
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1466594128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)