Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0444.Seq
(612 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 147 5e-36
SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06) 31 0.56
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 29 3.0
SB_49663| Best HMM Match : TolA (HMM E-Value=0.059) 29 3.0
SB_55954| Best HMM Match : TIL (HMM E-Value=0.74) 28 5.2
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 28 6.9
SB_33227| Best HMM Match : DEP (HMM E-Value=0.042) 28 6.9
SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05) 28 6.9
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 28 6.9
SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_10269| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.1
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 147 bits (357), Expect = 5e-36
Identities = 73/112 (65%), Positives = 84/112 (75%), Gaps = 2/112 (1%)
Frame = +2
Query: 2 TNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTDGN 181
TN RVRLL+SKGHSCYRPRR G RKRKSVRGCI D+ LSVL+LVIV+KG Q+IPGLTD
Sbjct: 36 TNGRVRLLLSKGHSCYRPRRTGERKRKSVRGCIVDSQLSVLSLVIVKKGEQDIPGLTDNT 95
Query: 182 VPRRLGPKRASKIRKLFNLSKEDD--DVVMSSNACSQPRKEKKMLNPDIRHL 331
+PRRLGPKR KIRK+FNLSKEDD V+ + K+ K P I+ L
Sbjct: 96 IPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGKKAKSKAPKIQRL 147
Score = 72.9 bits (171), Expect = 2e-13
Identities = 39/81 (48%), Positives = 50/81 (61%)
Frame = +1
Query: 262 YVVKRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAK 441
YV++R LP KEGK K + KAPKIQRLVTPVVLQ A+YAK
Sbjct: 123 YVIRRPLPEKEGK---KAKSKAPKIQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAK 179
Query: 442 LLAQRKKESKVRRQEEIKRRR 504
LLA+R KE+K +R E++ ++R
Sbjct: 180 LLAKRAKEAKEKRHEQLMKKR 200
>SB_30479| Best HMM Match : WD40 (HMM E-Value=1.1e-06)
Length = 1160
Score = 31.5 bits (68), Expect = 0.56
Identities = 17/64 (26%), Positives = 32/64 (50%)
Frame = +2
Query: 110 NLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMSSNACSQP 289
NLS++ + + E+ T GN P+ PK AS +R N + + V+++ +
Sbjct: 301 NLSLVEMKTLDVLDTEMRMKTTGNPPKLSAPKSASSLRVAANFRRVSEAVIVTQSLVKNA 360
Query: 290 RKEK 301
R+E+
Sbjct: 361 RREQ 364
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/28 (39%), Positives = 21/28 (75%)
Frame = +1
Query: 418 SSEAEYAKLLAQRKKESKVRRQEEIKRR 501
++EAE +L Q+K+E K +R+EE++ +
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEMREK 1200
>SB_49663| Best HMM Match : TolA (HMM E-Value=0.059)
Length = 591
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/72 (19%), Positives = 33/72 (45%)
Frame = +1
Query: 292 EGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESK 471
E + + R + +++R+ +Q +E + AK + QR+ E +
Sbjct: 285 EARNRQRKREREEELERIERVEEMQRKTQEKKRIEEEEQKRKEAEEKKAKEIEQRRMEEE 344
Query: 472 VRRQEEIKRRRS 507
++++EE KR+ +
Sbjct: 345 IKKEEEKKRKEA 356
>SB_55954| Best HMM Match : TIL (HMM E-Value=0.74)
Length = 172
Score = 28.3 bits (60), Expect = 5.2
Identities = 17/47 (36%), Positives = 24/47 (51%)
Frame = +2
Query: 86 VRGCIXDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRK 226
VR C D +VLA + + A E GLT+G V GP R +++
Sbjct: 86 VRSCPMDKQSTVLA--VETREACESKGLTEGCVSSAFGPGREEPVQE 130
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 260 VMSSNACSQPRKEKKMLNPDIRHLRSRG 343
V + C+ PR K+L P + HLR +G
Sbjct: 52 VFPNGLCTCPRNFTKLLKPPLSHLRLKG 79
>SB_33227| Best HMM Match : DEP (HMM E-Value=0.042)
Length = 765
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/33 (33%), Positives = 22/33 (66%)
Frame = +2
Query: 242 KEDDDVVMSSNACSQPRKEKKMLNPDIRHLRSR 340
++D + + +++ACS+P K K+ N + HL+ R
Sbjct: 215 QQDTEELETNSACSEPFKATKIWNTLVDHLKIR 247
>SB_29770| Best HMM Match : ig (HMM E-Value=3.4e-05)
Length = 454
Score = 27.9 bits (59), Expect = 6.9
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = -1
Query: 396 LLQSETMTS-TLQNYRGD*PLDLRCLMSGFSI 304
L+QSE+ T T NY P++L C GF +
Sbjct: 329 LIQSESTTQVTWSNYADRDPIELNCTFDGFPV 360
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 27.9 bits (59), Expect = 6.9
Identities = 16/69 (23%), Positives = 35/69 (50%)
Frame = +2
Query: 134 IVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMSSNACSQPRKEKKMLN 313
I+++ A+EI + + R G KR ++ + + ++DD V + + + + + +
Sbjct: 124 IMKEKAKEIDVKKERSTISRRGKKREPEVTRY--VLRKDDQTVFNGQTLDKNQNCRILSS 181
Query: 314 PDIRHLRSR 340
P+ RH R R
Sbjct: 182 PEARHKRRR 190
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 27.9 bits (59), Expect = 6.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +2
Query: 260 VMSSNACSQPRKEKKMLNPDIRHLRSRG 343
V + C+ PR K+L P + HLR +G
Sbjct: 52 VFPNGLCTCPRNFTKLLKPPLSHLRLKG 79
>SB_48944| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 103
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 32 KGHSCYRPRRDGXRKRKSVRGC 97
KGH CY + G KR+ R C
Sbjct: 18 KGHGCYAKQLSGFDKRQLTRSC 39
>SB_31395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 106
Score = 27.5 bits (58), Expect = 9.1
Identities = 10/22 (45%), Positives = 12/22 (54%)
Frame = +2
Query: 32 KGHSCYRPRRDGXRKRKSVRGC 97
KGH CY + G KR+ R C
Sbjct: 18 KGHGCYAKQLSGFDKRQLTRSC 39
>SB_10269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 119
Score = 27.5 bits (58), Expect = 9.1
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 158 IPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMS 268
I L +GNV R KRA +IR +F+L E+ V+ S
Sbjct: 29 ITALKEGNVMTRYYSKRAPEIR-IFSLKLEEFQVIWS 64
>SB_34145| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 679
Score = 27.5 bits (58), Expect = 9.1
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 445 LAQRKKESKVRRQEEIKRRR 504
+A+RKKE K R +EE +R+R
Sbjct: 254 IAKRKKEEKEREEEENRRKR 273
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,257,633
Number of Sequences: 59808
Number of extensions: 281627
Number of successful extensions: 922
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 920
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1499981500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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