Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0444.Seq
         (612 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...   132   2e-31
AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical ...    33   0.16 
U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical pr...    31   0.65 
Z71262-13|CAA95807.1|  100|Caenorhabditis elegans Hypothetical p...    29   3.5  
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   3.5  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   8.0  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score =  132 bits (319), Expect = 2e-31
 Identities = 62/84 (73%), Positives = 71/84 (84%)
 Frame = +2

Query: 2   TNSRVRLLMSKGHSCYRPRRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTDGN 181
           TN RVRLL+ KG SCYR R++G RKRKSVRGCI DAN+S L+LVIV+KG  EI GLTD  
Sbjct: 69  TNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMSALSLVIVKKGDGEIEGLTDSV 128

Query: 182 VPRRLGPKRASKIRKLFNLSKEDD 253
           +PR+LGPKRASKIRKLFNL+K DD
Sbjct: 129 LPRKLGPKRASKIRKLFNLTKHDD 152



 Score = 32.7 bits (71), Expect = 0.21
 Identities = 23/61 (37%), Positives = 26/61 (42%)
 Frame = +1

Query: 325 APKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLAQRKKESKVRRQEEIKRRR 504
           APKIQRL+TP  +                     A Y KLLA   K SK     +I RRR
Sbjct: 173 APKIQRLITPARIARKKYLLRQKRNQKIKMRDDAAAYHKLLA---KYSKEEHDAKIARRR 229

Query: 505 S 507
           S
Sbjct: 230 S 230


>AF038619-6|AAB92077.2|  442|Caenorhabditis elegans Hypothetical
           protein F56A11.6 protein.
          Length = 442

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 28/99 (28%), Positives = 42/99 (42%), Gaps = 2/99 (2%)
 Frame = +2

Query: 53  PRRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKL- 229
           P RD  R R  V      ANL VL +  + +    +  +  G+  +R+G   A K  K  
Sbjct: 186 PARDERRPRSRVTIFNFSANLLVLCMDHLHRMVHLV--MMTGDAMKRIGQLFAEKFSKKT 243

Query: 230 -FNLSKEDDDVVMSSNACSQPRKEKKMLNPDIRHLRSRG 343
             N  +  +DV  S +   + R+E+     D    RSRG
Sbjct: 244 KLNFRRRTEDVDRSKDRSLKRREERSRSRQDRERDRSRG 282


>U50193-1|AAA91247.2|  532|Caenorhabditis elegans Hypothetical
           protein ZK328.4 protein.
          Length = 532

 Score = 31.1 bits (67), Expect = 0.65
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +2

Query: 152 QEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMSSNACSQPRKEKK 304
           Q  P + D N   R  PK   K  K+ +LS  ++D   +   C +P KEK+
Sbjct: 109 QLYPEMFDSNQKPRQKPKEVKKALKVESLSDYENDDKENVPPCGKPSKEKE 159


>Z71262-13|CAA95807.1|  100|Caenorhabditis elegans Hypothetical
           protein F22D6.8 protein.
          Length = 100

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +3

Query: 207 VLPKSVSCSTLAKKMMTSLCRQTRAPSQGRKRK 305
           V+ KS  CS LA+K    +     AP +GRK K
Sbjct: 14  VIAKSNDCSMLAEKKKLPISDSKDAPKRGRKAK 46


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = -1

Query: 501 PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 364
           P F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 70  PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 465 FLLSLCKQFSIFSLRGLALSETLLL 391
           FL+S    FSIF++ G A S+ L+L
Sbjct: 283 FLMSTVSVFSIFAIGGFAFSDDLIL 307


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,690,512
Number of Sequences: 27780
Number of extensions: 210134
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 602
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1321669750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)