Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0444.Seq
(612 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B) 111 4e-25
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso... 111 5e-25
At5g62470.2 68418.m07840 myb family transcription factor (MYB96)... 30 1.4
At5g62470.1 68418.m07839 myb family transcription factor (MYB96)... 30 1.4
At2g16390.1 68415.m01876 SNF2 domain-containing protein / helica... 28 5.6
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 27 7.4
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ... 27 7.4
At1g24110.1 68414.m03042 peroxidase, putative similar to peroxid... 27 7.4
At2g35670.1 68415.m04375 transcription factor, putative / fertil... 27 9.8
At2g29210.1 68415.m03550 splicing factor PWI domain-containing p... 27 9.8
>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
Length = 249
Score = 111 bits (267), Expect = 4e-25
Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 TNSRVRLLMSKGHSCYRP--RRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTD 175
T RVRLL+ +G C+R RR G R+RKSVRGCI +LSVL LVIV+KG ++PGLTD
Sbjct: 69 TPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGVSDLPGLTD 128
Query: 176 GNVPRRLGPKRASKIRKLFNLSKEDD 253
PR GPKRASKIRKLFNL KEDD
Sbjct: 129 TEKPRMRGPKRASKIRKLFNLGKEDD 154
Score = 54.0 bits (124), Expect = 7e-08
Identities = 32/79 (40%), Positives = 42/79 (53%)
Frame = +1
Query: 271 KRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLA 450
+R K+GK+ +K APKIQRLVTP+ LQ S A+Y KLLA
Sbjct: 163 RRTFTNKKGKKVSK----APKIQRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLA 218
Query: 451 QRKKESKVRRQEEIKRRRS 507
R KE + RR E + ++RS
Sbjct: 219 SRLKEQRDRRSESLAKKRS 237
>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
protein S6, Arabidopsis thaliana, PID:g2662469
Length = 250
Score = 111 bits (266), Expect = 5e-25
Identities = 56/86 (65%), Positives = 64/86 (74%), Gaps = 2/86 (2%)
Frame = +2
Query: 2 TNSRVRLLMSKGHSCYRP--RRDGXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTD 175
T RVRLL+ +G C+R RR G R+RKSVRGCI +LSVL LVIV+KG ++PGLTD
Sbjct: 69 TPGRVRLLLHRGTPCFRGHGRRTGERRRKSVRGCIVSPDLSVLNLVIVKKGENDLPGLTD 128
Query: 176 GNVPRRLGPKRASKIRKLFNLSKEDD 253
PR GPKRASKIRKLFNL KEDD
Sbjct: 129 TEKPRMRGPKRASKIRKLFNLKKEDD 154
Score = 54.8 bits (126), Expect = 4e-08
Identities = 33/79 (41%), Positives = 42/79 (53%)
Frame = +1
Query: 271 KRVLPAKEGKENAKPRHKAPKIQRLVTPVVLQXXXXXXXXXXXXXXXXXSSEAEYAKLLA 450
+R K+GKE +K APKIQRLVTP+ LQ S A+Y KLLA
Sbjct: 163 RRKFTNKKGKEVSK----APKIQRLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLA 218
Query: 451 QRKKESKVRRQEEIKRRRS 507
R KE + RR E + ++RS
Sbjct: 219 SRLKEQRDRRSESLAKKRS 237
>At5g62470.2 68418.m07840 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 352
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 149 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMSSNACSQ 286
A +P TD ++ K++K+ +ED+D V SSN SQ
Sbjct: 93 ASYLPERTDNDIKNYWNTHLKKKLKKINESGEEDNDGVSSSNTSSQ 138
>At5g62470.1 68418.m07839 myb family transcription factor (MYB96)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 351
Score = 29.9 bits (64), Expect = 1.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Frame = +2
Query: 149 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMSSNACSQ 286
A +P TD ++ K++K+ +ED+D V SSN SQ
Sbjct: 92 ASYLPERTDNDIKNYWNTHLKKKLKKINESGEEDNDGVSSSNTSSQ 137
>At2g16390.1 68415.m01876 SNF2 domain-containing protein / helicase
domain-containing protein low similarity to RAD54
[Drosophila melanogaster] GI:1765914; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 888
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = +2
Query: 155 EIPGLTDGNVPRRLGPKRASKIRKL 229
E+PGL D V L PK+ ++++KL
Sbjct: 620 ELPGLADFTVVLNLSPKQLNEVKKL 644
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 27.5 bits (58), Expect = 7.4
Identities = 15/40 (37%), Positives = 22/40 (55%)
Frame = +1
Query: 424 EAEYAKLLAQRKKESKVRRQEEIKRRRSVQCVIPRALARV 543
+ EY K + K +R QEE+KR +SV VI + + V
Sbjct: 47 QEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIGQFMEMV 86
>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 669
Score = 27.5 bits (58), Expect = 7.4
Identities = 23/70 (32%), Positives = 31/70 (44%)
Frame = +2
Query: 65 GXRKRKSVRGCIXDANLSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLSK 244
G R +SV G I N V+ RKG P T+G +L K S F+ K
Sbjct: 200 GLRDSRSVEGYIP--NHVGYEPVVQRKGPG-FPSFTEGGHSTQLLQKYGSDDNNSFHNGK 256
Query: 245 EDDDVVMSSN 274
+ DDV+ S+
Sbjct: 257 DADDVLRESS 266
>At1g24110.1 68414.m03042 peroxidase, putative similar to peroxidase
ATP26a, GB:CAA72487
Length = 326
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/60 (28%), Positives = 30/60 (50%)
Frame = +2
Query: 149 AQEIPGLTDGNVPRRLGPKRASKIRKLFNLSKEDDDVVMSSNACSQPRKEKKMLNPDIRH 328
A I +D N P + PK A+++RKL + +D+ + + N P K M +++H
Sbjct: 201 ASRIFNKSDQNGPVEMNPKYAAELRKLC-ANYTNDEQMSAFNDVFTPGKFDNMYYKNLKH 259
>At2g35670.1 68415.m04375 transcription factor, putative /
fertilization-independent seed 2 protein (FIS2)
identical to GB:AF096095
Length = 632
Score = 27.1 bits (57), Expect = 9.8
Identities = 20/70 (28%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Frame = +2
Query: 113 LSVLALVIVRKGAQEIPGLTDGNVPRRLGPKRASKIRKLFNLS-KEDDDVVMSSNACSQP 289
L+ L I ++P + DGNV P+ S K + +DDDV A S
Sbjct: 144 LTTTQLAIAESSEPKVPHVNDGNVSS--PPRAHSSAEKNESTHVNDDDDVSSPPRAHSLE 201
Query: 290 RKEKKMLNPD 319
+ E +N D
Sbjct: 202 KNESTHVNED 211
>At2g29210.1 68415.m03550 splicing factor PWI domain-containing
protein contains Pfam profile PF01480: PWI domain
Length = 878
Score = 27.1 bits (57), Expect = 9.8
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 421 SEAEYAKLLAQRKKESKVRRQEEIKRRR 504
S+ + K +R+KE K R+EE KRRR
Sbjct: 784 SDVDDRKEAKRRRKEEKKTRKEEKKRRR 811
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,235,233
Number of Sequences: 28952
Number of extensions: 199453
Number of successful extensions: 601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 573
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 597
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1226538000
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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