Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0442.Seq
(799 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 165 1e-39
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 155 1e-36
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 146 7e-34
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 130 4e-29
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 125 1e-27
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 99 6e-20
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 88 3e-16
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 79 1e-13
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 73 1e-11
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 72 1e-11
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 71 4e-11
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 71 4e-11
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 67 6e-10
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 62 1e-08
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 62 2e-08
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 61 4e-08
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 61 4e-08
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 59 1e-07
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 58 2e-07
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 56 1e-06
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 56 1e-06
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 54 4e-06
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 53 7e-06
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 52 1e-05
UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN full-le... 39 0.13
UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsi... 35 2.7
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 165 bits (401), Expect = 1e-39
Identities = 72/85 (84%), Positives = 80/85 (94%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHGS+GF P+KRS RHRGKVK+FPKDDPSKPVHLTAF+GYKAGMTH+VRE R
Sbjct: 3 HRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREVDR 62
Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
PGSK+NKKE+VEAVTI+ETPPMV V
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMVVV 87
Score = 159 bits (387), Expect = 6e-38
Identities = 81/170 (47%), Positives = 102/170 (60%), Gaps = 1/170 (0%)
Frame = +3
Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
G+VGY+ETP GLR TV+AEH+S++C+RRFYKNW+ WQDE G+K +E
Sbjct: 88 GIVGYVETPRGLRTFKTVFAEHISDECKRRFYKNWHKSKKKAFTKYCKKWQDEDGKKQLE 147
Query: 435 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPIPV 614
KDF M +YC V+RVIAHTQM+LL +++ L + + K + ARE LE +PV
Sbjct: 148 KDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHLMEIQVNGGTVAEKLDWARERLEQQVPV 207
Query: 615 DSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIGA 761
+ VF QDEM D IGVT G Y VTSR H P T CIGA
Sbjct: 208 NQVFGQDEMIDVIGVTKGKGYKGVTSR-WHTKKLPRKTHRGLRKVACIGA 256
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 155 bits (376), Expect = 1e-36
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ +
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDK 62
Query: 181 PGSKINKKEIVEAVTIIETPPMV 249
PGSK+NKKE+VEAVTI+ETPPMV
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMV 85
Score = 107 bits (256), Expect = 4e-22
Identities = 46/83 (55%), Positives = 56/83 (67%)
Frame = +3
Query: 249 LCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKS 428
+ GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K
Sbjct: 86 IAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKL 145
Query: 429 IEKDFKKMIRYCSVVRVIAHTQM 497
IE DF K+ +YCS +RVIAHTQM
Sbjct: 146 IEADFAKLKKYCSSIRVIAHTQM 168
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 146 bits (353), Expect = 7e-34
Identities = 64/85 (75%), Positives = 74/85 (87%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHG +GF P KRS RHRGKVK +P+DDPS+PVHLTAF+GYKAGMTH +RE R
Sbjct: 3 HRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREVHR 62
Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
PG KI+K+E VEAVTI+ETPP+V V
Sbjct: 63 PGLKISKREEVEAVTIVETPPLVVV 87
Score = 137 bits (331), Expect = 3e-31
Identities = 72/170 (42%), Positives = 96/170 (56%), Gaps = 1/170 (0%)
Frame = +3
Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
GVVGY+ TP GLR+ T++AEH+S++CRRRFYK+W+ W+D G+K ++
Sbjct: 88 GVVGYVATPRGLRSFKTIFAEHLSDECRRRFYKDWHKSKKKAFTKACKRWRDTDGKKQLQ 147
Query: 435 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPIPV 614
KDF M +YC V+RVI HTQMKLL +++ + + L K A+ LE +PV
Sbjct: 148 KDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPV 207
Query: 615 DSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIGA 761
SVF+Q E+ D I VT G VTSR H P T CIGA
Sbjct: 208 HSVFSQSEVIDVIAVTKGRGVKGVTSR-WHTKKLPRKTHKGLRKVACIGA 256
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 130 bits (314), Expect = 4e-29
Identities = 56/85 (65%), Positives = 70/85 (82%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
H KF PRHG +GF P+KRSR+ RG+ ++FPKDDPS+ HLT+F+ YKAGMTH+VR+ R
Sbjct: 54 HCKFEHPRHGHLGFLPRKRSRQIRGRARSFPKDDPSQKPHLTSFMVYKAGMTHIVRDVDR 113
Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
PGSK+NKKE+VE VTI+E PPMV V
Sbjct: 114 PGSKVNKKEVVEPVTILEAPPMVVV 138
Score = 81.4 bits (192), Expect = 2e-14
Identities = 47/150 (31%), Positives = 73/150 (48%), Gaps = 3/150 (2%)
Frame = +3
Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
G+VGY +TP G + + TVWA H S + RRRFYKNW + GR +
Sbjct: 139 GIVGYRQTPVGHKTIGTVWAHHTSVEFRRRFYKNWKQSAQLAFTKRKQFARTTEGRLAEA 198
Query: 435 KDFKKMIRYCSVVRVIAHTQMKLLNSDK---RRLTLWKSNLTVVPSRTK*NGAREHLEXP 605
+ K + ++RV+AHTQ++ L +++ ++ + + + K A+ LE
Sbjct: 199 RTLKAFEKKADIIRVVAHTQLRKLRNNRVGVKKAHVSEIQINGGTIAQKIELAKSLLEKE 258
Query: 606 IPVDSVFAQDEMXDCIGVTXGPRYXXVTSR 695
+ +DSVF Q E D VT G + V R
Sbjct: 259 VRIDSVFQQSEACDVCAVTKGHGFTGVVKR 288
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 125 bits (301), Expect = 1e-27
Identities = 55/83 (66%), Positives = 67/83 (80%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
+R FSAPRHGS+GF P+K S H GKVK FPKDD SKPVHLT F+ +KA MTH++++ R
Sbjct: 3 YRNFSAPRHGSLGFSPQKHSCWHHGKVKLFPKDDSSKPVHLTDFLVHKANMTHIIQKVDR 62
Query: 181 PGSKINKKEIVEAVTIIETPPMV 249
P SK+NKKE+VE V I+ETPPMV
Sbjct: 63 PESKMNKKEVVEGVAIVETPPMV 85
Score = 74.5 bits (175), Expect = 3e-12
Identities = 35/93 (37%), Positives = 55/93 (59%)
Frame = +3
Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
G+VGYIE P GL V+AEH+S ++ FYKNW+ ++G++ +E
Sbjct: 88 GIVGYIEIPRGLWTFKAVFAEHISGKSKKCFYKNWHSEKKASTKYF------DMGKRQLE 141
Query: 435 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTL 533
+FK M +YC V+ ++AHTQM LL+ +++ L
Sbjct: 142 MEFKSMKKYCQVICIVAHTQMCLLSLHQKKAHL 174
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 99 bits (238), Expect = 6e-20
Identities = 54/115 (46%), Positives = 75/115 (65%), Gaps = 4/115 (3%)
Frame = +1
Query: 52 KRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKINKKEIVEAVTII 231
K S +H+GKV FPKD SKPV+L+AF+GY+AGMTHVVR+ RPGSK++KKE+VE VTI+
Sbjct: 1 KCSSQHQGKVTGFPKDGSSKPVYLSAFLGYQAGMTHVVRKVDRPGSKVHKKEVVEVVTIV 60
Query: 232 ETPPMVCVVLL---DTLRPLMDY-ALF*LSGRSICLKTVDVASTKTGTNARRRLS 384
ET P + V + +T+ L + ++F + C +T T T N + R S
Sbjct: 61 ETMPFMTVGTVGCTETIWGLQTFKSVFAKHISNECKRTGIKYKTNTSPNTKARSS 115
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 87.8 bits (208), Expect = 3e-16
Identities = 45/81 (55%), Positives = 55/81 (67%)
Frame = +1
Query: 4 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRP 183
RK APR GS+GF P+KR+ R +VK +P+ D KPV L AF+GY+AGMTHV RP
Sbjct: 4 RKKRAPRRGSLGFSPRKRASRLVPRVKRWPEVDIGKPVPL-AFLGYRAGMTHVFMVDDRP 62
Query: 184 GSKINKKEIVEAVTIIETPPM 246
G + KEI VTI+ETPPM
Sbjct: 63 GRPTSGKEIFVPVTIVETPPM 83
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 79.0 bits (186), Expect = 1e-13
Identities = 37/76 (48%), Positives = 51/76 (67%)
Frame = +1
Query: 19 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKIN 198
P+ GSMGF P+KR+ R G+VK++P+ D S V + F G+KAGMTHV+ PGS
Sbjct: 7 PKKGSMGFGPRKRANRPYGRVKSWPETD-SDEVRVQGFAGWKAGMTHVMMRDLNPGSPSA 65
Query: 199 KKEIVEAVTIIETPPM 246
E+ +AVT++E PPM
Sbjct: 66 GAEVRKAVTVVEVPPM 81
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 72.5 bits (170), Expect = 1e-11
Identities = 36/87 (41%), Positives = 49/87 (56%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRK ++PR GS G P+KRS + +P+ + P L F+GYK GMTHV
Sbjct: 3 HRKLASPRRGSAGLRPRKRSSELLPTPRTWPQINSQNP-KLLGFVGYKVGMTHVFMIDDW 61
Query: 181 PGSKINKKEIVEAVTIIETPPMVCVVL 261
P S N KEI VT++E PP++ + L
Sbjct: 62 PNSPTNGKEIYMPVTVLEVPPIIPLAL 88
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 72.1 bits (169), Expect = 1e-11
Identities = 33/76 (43%), Positives = 51/76 (67%)
Frame = +1
Query: 19 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKIN 198
P+ GSMGF P+KR+ R G++ ++P+ + S+ + + F G+KAGMTHV+ P S
Sbjct: 7 PKRGSMGFSPRKRAIRPFGRITSWPETESSE-IRVQGFAGWKAGMTHVLMRDTNPHSTSA 65
Query: 199 KKEIVEAVTIIETPPM 246
+EI +AVT++E PPM
Sbjct: 66 GQEIRKAVTVVEVPPM 81
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 70.5 bits (165), Expect = 4e-11
Identities = 38/82 (46%), Positives = 49/82 (59%)
Frame = +1
Query: 4 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRP 183
RK APR GS G P+KR+ +V+++P D KP+ AF+GYK GMTHV+ R
Sbjct: 4 RKKEAPRRGSAGLRPRKRAASIVPRVRSWPSIDEVKPL---AFLGYKVGMTHVIMIDDRE 60
Query: 184 GSKINKKEIVEAVTIIETPPMV 249
+EI VT+IETPPMV
Sbjct: 61 HVDTAGQEIFVPVTVIETPPMV 82
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 70.5 bits (165), Expect = 4e-11
Identities = 36/80 (45%), Positives = 50/80 (62%)
Frame = +1
Query: 7 KFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPG 186
K PR GS+GF P+KR++ +++++PK+ V + F GYKAGMTH++ PG
Sbjct: 3 KVHRPRRGSLGFSPRKRAKSIVPRIRSWPKE---TEVRMLGFAGYKAGMTHILMIDDEPG 59
Query: 187 SKINKKEIVEAVTIIETPPM 246
N KEI VTIIETPP+
Sbjct: 60 -LTNGKEIFMPVTIIETPPL 78
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 66.9 bits (156), Expect = 6e-10
Identities = 34/76 (44%), Positives = 43/76 (56%)
Frame = +1
Query: 19 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKIN 198
PR GSMGF P+KR+ + ++P DD V L F GYKAGMTHVV + +
Sbjct: 7 PRKGSMGFSPRKRAESEVPRFNSWPADDGE--VGLQGFAGYKAGMTHVVLVDDKANAPTE 64
Query: 199 KKEIVEAVTIIETPPM 246
E VT++ETPPM
Sbjct: 65 GMETTVPVTVVETPPM 80
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 62.5 bits (145), Expect = 1e-08
Identities = 31/81 (38%), Positives = 50/81 (61%), Gaps = 1/81 (1%)
Frame = +1
Query: 19 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKIN 198
PR GS+ F P+KR++R +++++P++D V L AF YKAGM+H + P S
Sbjct: 8 PRRGSLAFSPRKRAKRPVPRIRSWPEEDT---VRLQAFPVYKAGMSHAFIKEDNPKSPNA 64
Query: 199 KKEIVEAVTIIETPPM-VCVV 258
+E+ +TI+E PP+ VC +
Sbjct: 65 GQEVFTPITILEAPPINVCAI 85
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 62.1 bits (144), Expect = 2e-08
Identities = 30/76 (39%), Positives = 45/76 (59%)
Frame = +1
Query: 19 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKIN 198
PR GS+ F P+KR+ R +++++P ++ V + F GYKAGMTH + P S
Sbjct: 12 PRRGSLAFSPRKRASRPVPRIRSWPDEER---VRVQGFAGYKAGMTHAIMIDDWPNSPTE 68
Query: 199 KKEIVEAVTIIETPPM 246
+EI VTI++ PPM
Sbjct: 69 GEEISVPVTILDAPPM 84
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 60.9 bits (141), Expect = 4e-08
Identities = 36/105 (34%), Positives = 58/105 (55%), Gaps = 18/105 (17%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFP------------------KDDPSKPVHLT 126
HRK+SAPRHGS+G P+KR+ + +++++P K KPV L
Sbjct: 3 HRKYSAPRHGSLGVRPRKRAAKIVPRIRSWPTQSWFDLLVEKLGDEAVNKGIAPKPV-LL 61
Query: 127 AFIGYKAGMTHVVREPXRPGSKINKKEIVEAVTIIETPPMVCVVL 261
++ YKAGM+H + RP + + KEI VT+++ PP++ + L
Sbjct: 62 GYVAYKAGMSHAIIIDDRPHTFTSGKEIAIPVTVLDAPPILILGL 106
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 60.9 bits (141), Expect = 4e-08
Identities = 31/80 (38%), Positives = 47/80 (58%)
Frame = +1
Query: 16 APRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKI 195
APR GSMGF+P+KR+ R ++K +PK + KP+ AF YK GMTH + I
Sbjct: 8 APRRGSMGFWPRKRASRIYPRIKTWPKIEEIKPL---AFAAYKVGMTHTI-------LNI 57
Query: 196 NKKEIVEAVTIIETPPMVCV 255
N + + VT++E P ++ +
Sbjct: 58 NGERVFTPVTVLEAPELLVI 77
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 59.3 bits (137), Expect = 1e-07
Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 2/79 (2%)
Frame = +1
Query: 16 APRHGSMGFYPKKRSRRHRGKVKAFPK--DDPSKPVHLTAFIGYKAGMTHVVREPXRPGS 189
APR GS+G+ P+ R+R + K++ + + D P + F+G+KAGM+H+V RP S
Sbjct: 6 APRRGSLGYSPRVRARSQKPKMRNWAELGDQPK----IQGFVGFKAGMSHIVMVDDRPHS 61
Query: 190 KINKKEIVEAVTIIETPPM 246
EI VTI+E P M
Sbjct: 62 ATEGMEISVPVTIVEAPQM 80
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 58.4 bits (135), Expect = 2e-07
Identities = 33/87 (37%), Positives = 46/87 (52%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKF PR GS+GF PKKRS R K + + +++ F K THV+R
Sbjct: 3 HRKFEHPRIGSLGFLPKKRSNRIFPSSKTYKEIIHIYYPYISQFASLKVASTHVLRICNI 62
Query: 181 PGSKINKKEIVEAVTIIETPPMVCVVL 261
SK + I++ VT++E PP+ V L
Sbjct: 63 VSSKSYQNPIIDEVTLMECPPIEVVGL 89
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 56.0 bits (129), Expect = 1e-06
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +1
Query: 22 RHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKINK 201
R GSM +YP+ R++ +++++P + S PV + F G+K GMTHV R S
Sbjct: 8 RRGSMAYYPRVRAKSIEPRIRSWP--EISGPVKVQGFAGFKVGMTHVEMVDYRKTSVTAG 65
Query: 202 KEIVEAVTIIETPPM 246
+ I VT+IE PP+
Sbjct: 66 QPIFVPVTVIEVPPL 80
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 55.6 bits (128), Expect = 1e-06
Identities = 28/82 (34%), Positives = 46/82 (56%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFS PR GS+ + P+ R+R +++ +P + +P L A G+KAG +V R
Sbjct: 3 HRKFSQPRRGSLAYSPRGRARSMEARIRGWP-ERQGEP-RLLAHAGFKAGCIQIVSIDDR 60
Query: 181 PGSKINKKEIVEAVTIIETPPM 246
+ K++V T++ TPP+
Sbjct: 61 EHTPNAGKQLVSLGTVLVTPPL 82
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 54.0 bits (124), Expect = 4e-06
Identities = 28/81 (34%), Positives = 41/81 (50%)
Frame = +1
Query: 19 PRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKIN 198
PR GS +YP+KR+R +V+ +P++ F GYK GM HV+ S
Sbjct: 7 PRRGSRAYYPRKRARSIVARVRRWPQNREG----FLGFAGYKVGMLHVIGVEMNKNSPFY 62
Query: 199 KKEIVEAVTIIETPPMVCVVL 261
+E A T+IE PP+ V +
Sbjct: 63 GQERFYAATVIEVPPLKVVAV 83
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 53.2 bits (122), Expect = 7e-06
Identities = 26/82 (31%), Positives = 46/82 (56%)
Frame = +1
Query: 4 RKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRP 183
RK +PR GS+ + P+ R++ +++A+PK D +P + A G+KAG +V R
Sbjct: 4 RKRHSPRRGSLAYSPRVRAKSMEARIRAWPKLDSEEP-KILAHCGFKAGCVQIVSIDDRE 62
Query: 184 GSKINKKEIVEAVTIIETPPMV 249
K++V T++ TPP++
Sbjct: 63 KVPNAGKQLVSLGTVLVTPPVL 84
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 52.4 bits (120), Expect = 1e-05
Identities = 39/128 (30%), Positives = 58/128 (45%)
Frame = -3
Query: 686 DTXVPWPXGDTNAVXHFILGKHRIDRDRXLQMFSGPISLCPRWYHR*VGFP*CEPSFVAV 507
DT GD+N + HFIL ++R++R+ ++F GP++ + F
Sbjct: 46 DTLETVTFGDSNDINHFILFENRVNRNFFFKVFFGPVNFVGDGTTVDLDFSQVSFLLRQW 105
Query: 506 *QLHLSVGNDSYNTTVADHLLEIFFY*FASKLILPFLTGFSESLLLAFVPVFVEATSTVF 327
L L V DS N +V + F F + F F E LL F+PV VE++S F
Sbjct: 106 SLLDLGVSQDSDNRSVLLDSGQFSFNLFGVSGV--FTRVFGEGFLLGFIPVLVESSSDFF 163
Query: 326 RHMLRPDS 303
+ PDS
Sbjct: 164 TQVFSPDS 171
>UniRef50_Q78TB4 Cluster: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3; n=1;
Mus musculus|Rep: 16 days embryo head cDNA, RIKEN
full-length enriched library, clone:C130041A08
product:weakly similar to 60S RIBOSOMAL PROTEIN L3 - Mus
musculus (Mouse)
Length = 109
Score = 39.1 bits (87), Expect = 0.13
Identities = 20/46 (43%), Positives = 26/46 (56%)
Frame = +1
Query: 67 HRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXRPGSKINKK 204
HR + K FPK+D K HL F+ +A MT+ V E R G K +K
Sbjct: 8 HRIQAKDFPKEDLPKSAHLIVFLVSRAVMTYFVWEINRSGPKWTRK 53
>UniRef50_Q5Y974 Cluster: Structural polyprotein; n=13; Solenopsis
invicta virus 1|Rep: Structural polyprotein - Solenopsis
invicta virus 1
Length = 1137
Score = 34.7 bits (76), Expect = 2.7
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Frame = -2
Query: 336 DSLQTYAPPRQSKERV--VHEGSQCIQQHHTNHRRSLDDGDSLHDLFLVDF*TGTXRFSN 163
D L+ + KE V +H G Q Q+ H RR + ++ D+ LVD T +
Sbjct: 446 DQLKEFNHHTARKEMVSMMHLGYQYSQRRH---RRDVTAARAIADMILVDERDATMQVQA 502
Query: 162 HVGHTGLITDKSSQMNRFARVV 97
VG GLITD +S ++ A V
Sbjct: 503 EVGGQGLITDIASTVSAVAGAV 524
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 775,687,460
Number of Sequences: 1657284
Number of extensions: 15035947
Number of successful extensions: 34509
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 33400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34474
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 68319938570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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