Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0442.Seq
         (799 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   146   4e-36
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   145   6e-36
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    32   0.11 
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.1  
SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4 |Schi...    26   5.4  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    26   7.2  
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    25   9.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  146 bits (353), Expect = 4e-36
 Identities = 65/85 (76%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+  R
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
           PGSK++K+EI+EAVTIIETPPMV V
Sbjct: 63  PGSKMHKREILEAVTIIETPPMVVV 87



 Score =  122 bits (293), Expect = 8e-29
 Identities = 64/169 (37%), Positives = 93/169 (55%)
 Frame = +3

Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
           GVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    +SI 
Sbjct: 88  GVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSIN 145

Query: 435 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPIPV 614
           ++ +++ +YCSVVRV+AHTQ++     +++  L +  +       K   AREH E  + +
Sbjct: 146 RELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDI 205

Query: 615 DSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XSCCIGA 761
            S F Q+EM D IGVT G      T+R   +       +      CIGA
Sbjct: 206 KSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGA 254


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  145 bits (352), Expect = 6e-36
 Identities = 64/85 (75%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           H KF  PRHGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+  R
Sbjct: 3   HCKFEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDR 62

Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
           PGSK++K+EI+EAVT+IETPPMV V
Sbjct: 63  PGSKMHKREILEAVTVIETPPMVVV 87



 Score =  122 bits (293), Expect = 8e-29
 Identities = 64/169 (37%), Positives = 93/169 (55%)
 Frame = +3

Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
           GVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+             + +    +SI 
Sbjct: 88  GVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKSKKKAFTKYAKKYAE--STQSIN 145

Query: 435 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPIPV 614
           ++ +++ +YCSVVRV+AHTQ++     +++  L +  +       K   AREH E  + +
Sbjct: 146 RELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQVNGGSVADKVEWAREHFEKTVDI 205

Query: 615 DSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XSCCIGA 761
            S F Q+EM D IGVT G      T+R   +       +      CIGA
Sbjct: 206 KSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLRKVACIGA 254


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 31.9 bits (69), Expect = 0.11
 Identities = 25/78 (32%), Positives = 37/78 (47%)
 Frame = +1

Query: 187 SKINKKEIVEAVTIIETPPMVCVVLLDTLRPLMDYALF*LSGRSICLKTVDVASTKTGTN 366
           S++ K + V+     +  P VCV    TL    DYA+   S +S+ LK   V+   T T 
Sbjct: 192 SELFKPKPVKLAPPKKKTPKVCVPGRLTLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTK 251

Query: 367 ARRRLSLKPVRNGRMSLD 420
            RRR +    RN  + L+
Sbjct: 252 KRRRTANTSQRNDGLDLN 269


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = -1

Query: 343 RRRQSSDICSAQTVKRARSP*GVSMYPTTPHKPSEESR 230
           +R    D  SA+  K AR P      PTTP  P++ ++
Sbjct: 469 KRVSKHDKASAEKHKVARKPSSTGQEPTTPSTPAKSAQ 506


>SPCC1393.10 |ctr4||copper transporter complex subunit Ctr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 289

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = -3

Query: 287 SMRGLNVSNNTTQTIGGVSMMVTAST 210
           SM G+N+SN+TT ++ G++M  T +T
Sbjct: 88  SMSGMNMSNSTT-SMSGMNMTNTTTT 112


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 25.8 bits (54), Expect = 7.2
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = -2

Query: 171 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESHRPMTGC*KF 7
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH   T    F
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTF 398


>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 25.4 bits (53), Expect = 9.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = -3

Query: 425  FASKLILPFLTGFSESLLLAFVPVFVEATST 333
            F SKL L  +  F E + LAF+  F+E TS+
Sbjct: 1032 FFSKLTLQQVQEFYEVVPLAFINCFLEFTSS 1062


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,158,767
Number of Sequences: 5004
Number of extensions: 61508
Number of successful extensions: 143
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 389395636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)