Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0442.Seq
         (799 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   147   8e-36
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   146   2e-35
01_06_0083 + 26283492-26283756,26284255-26284467,26284620-262847...    29   3.2  
05_01_0044 + 307711-307883,308001-308063,308200-308316,308558-30...    28   7.5  
06_03_0884 + 25651238-25652164,25653851-25654504                       28   9.9  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  147 bits (357), Expect = 8e-36
 Identities = 65/88 (73%), Positives = 76/88 (86%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           HRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD SKP HLT+F+GYKAGMTH+VRE  +
Sbjct: 3   HRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVSKPCHLTSFVGYKAGMTHIVREVEK 62

Query: 181 PGSKINKKEIVEAVTIIETPPMVCVVLL 264
           PGSK++KKE  EAVTIIETPP+V V L+
Sbjct: 63  PGSKLHKKETCEAVTIIETPPLVIVGLV 90



 Score =  120 bits (288), Expect = 2e-27
 Identities = 60/150 (40%), Positives = 88/150 (58%), Gaps = 1/150 (0%)
 Frame = +3

Query: 249 LCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKS 428
           + G+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW              +  + G+K 
Sbjct: 86  IVGLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKE 145

Query: 429 IEKDFKKMIRYCSVVRVIAHTQM-KLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXP 605
           I+   +KM +Y S+VRVIAHTQ+ K+    +++  L +  +       K +   +  E  
Sbjct: 146 IQMQLEKMKKYASIVRVIAHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKE 205

Query: 606 IPVDSVFAQDEMXDCIGVTXGPRYXXVTSR 695
           IPVD+VF +DEM D IGVT G  Y  V +R
Sbjct: 206 IPVDAVFQKDEMIDIIGVTKGKGYEGVVTR 235


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  146 bits (353), Expect = 2e-35
 Identities = 64/88 (72%), Positives = 76/88 (86%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           HRKF  PRHGS+GF P+KRS RHRGKVK+FPKDD +KP HLT+F+GYKAGMTH+VRE  +
Sbjct: 3   HRKFEHPRHGSLGFLPRKRSSRHRGKVKSFPKDDVNKPCHLTSFVGYKAGMTHIVREVEK 62

Query: 181 PGSKINKKEIVEAVTIIETPPMVCVVLL 264
           PGSK++KKE  EAVTIIETPP+V V L+
Sbjct: 63  PGSKLHKKETCEAVTIIETPPIVVVGLV 90



 Score =  118 bits (284), Expect = 5e-27
 Identities = 60/148 (40%), Positives = 86/148 (58%), Gaps = 1/148 (0%)
 Frame = +3

Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
           G+V Y++TP GLR+L +VWA+H+SE+ RRRFYKNW              +  + G+K I+
Sbjct: 88  GLVAYVKTPRGLRSLNSVWAQHLSEEVRRRFYKNWCKSKKKAFTKYALKYDSDAGKKEIQ 147

Query: 435 KDFKKMIRYCSVVRVIAHTQM-KLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPIP 611
              +KM +Y SVVRVI HTQ+ K+    +++  L +  +       K +   +  E  IP
Sbjct: 148 MQLEKMKKYASVVRVIVHTQIRKMKGLKQKKAHLMEIQINGGTIADKVDYGYKFFEKEIP 207

Query: 612 VDSVFAQDEMXDCIGVTXGPRYXXVTSR 695
           VD+VF +DEM D IGVT G  Y  V +R
Sbjct: 208 VDAVFQKDEMIDIIGVTKGKGYEGVVTR 235


>01_06_0083 +
           26283492-26283756,26284255-26284467,26284620-26284771,
           26284884-26285157,26285277-26285485
          Length = 370

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 428 NRKRFQEDDPLL*CCKSHCPHSNEAVKQR 514
           N +RF  +DPLL CC  H P+   A   R
Sbjct: 297 NPRRFGINDPLLACCGGHGPYHTGATCDR 325


>05_01_0044 +
           307711-307883,308001-308063,308200-308316,308558-309359
          Length = 384

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 15/33 (45%), Positives = 22/33 (66%)
 Frame = +2

Query: 491 SNEAVKQRQKKAHIMEIQLNGGTIEDKVKWGQR 589
           S E VKQRQ++ H MEI   GG  ++++K  Q+
Sbjct: 343 STEQVKQRQEEDHKMEIA--GGDEQEEIKQQQQ 373


>06_03_0884 + 25651238-25652164,25653851-25654504
          Length = 526

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 252 CGVVGYIETPHGLRALLTVWAEHMSEDC 335
           C V+GY + P G + L+ VWA    E C
Sbjct: 393 CQVLGY-DVPRGTQVLVNVWAIGRDERC 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,368,483
Number of Sequences: 37544
Number of extensions: 431116
Number of successful extensions: 992
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 960
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)