Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0442.Seq
         (799 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)               146   2e-35
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)         146   2e-35
SB_1997| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.9  
SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)                    30   2.5  
SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)            28   7.6  
SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
          Length = 338

 Score =  146 bits (354), Expect = 2e-35
 Identities = 75/170 (44%), Positives = 96/170 (56%), Gaps = 1/170 (0%)
 Frame = +3

Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
           GVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW              W D+ G+KSIE
Sbjct: 87  GVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKKAFTKASKRWADDDGKKSIE 146

Query: 435 KDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPS-RTK*NGAREHLEXPIP 611
           +DF  M +YC V+RVI HTQ KLL   +++  + +  +        K +  RE LE P P
Sbjct: 147 EDFNTMKKYCKVIRVICHTQQKLLKMRQKKAHIMEIQVNGGKDVAEKVDWCRERLENPAP 206

Query: 612 VDSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XSCCIGA 761
           V  VF+ DEM D IGVT G  +  VT R   +       +      CIGA
Sbjct: 207 VRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLRKVACIGA 256



 Score =  146 bits (353), Expect = 2e-35
 Identities = 64/85 (75%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           HRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE  +
Sbjct: 2   HRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEK 61

Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
           PGSK+NKKE VEAVTIIETPPM+ V
Sbjct: 62  PGSKLNKKEKVEAVTIIETPPMMVV 86


>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
          Length = 347

 Score =  146 bits (353), Expect = 2e-35
 Identities = 64/85 (75%), Positives = 75/85 (88%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           HRKF APRHGS+GF P+KR +RHRGKVK+FPKDD + P HLTAFIG+KAGMTH++RE  +
Sbjct: 50  HRKFEAPRHGSLGFLPRKRCKRHRGKVKSFPKDDNTLPPHLTAFIGFKAGMTHILREVEK 109

Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
           PGSK+NKKE VEAVTIIETPPM+ V
Sbjct: 110 PGSKLNKKEKVEAVTIIETPPMMVV 134



 Score =  109 bits (263), Expect = 2e-24
 Identities = 46/80 (57%), Positives = 56/80 (70%)
 Frame = +3

Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
           GVVGYIETP G+R L T+WAEH+SE+C+RRFYKNW              W D+ G+KSIE
Sbjct: 135 GVVGYIETPRGMRVLKTIWAEHLSEECKRRFYKNWCNSKKKAFTKASKRWADDDGKKSIE 194

Query: 435 KDFKKMIRYCSVVRVIAHTQ 494
           +DF  M +YC V+RVI HTQ
Sbjct: 195 EDFNTMKKYCKVIRVICHTQ 214


>SB_1997| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 63

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 14/28 (50%), Positives = 20/28 (71%)
 Frame = -2

Query: 288 VHEGSQCIQQHHTNHRRSLDDGDSLHDL 205
           +H+G QC ++HHT  + SLDD  +LH L
Sbjct: 33  IHKGGQCKERHHT--QASLDD-SNLHKL 57


>SB_48237| Best HMM Match : zf-P11 (HMM E-Value=6.5)
          Length = 173

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 21/76 (27%), Positives = 29/76 (38%), Gaps = 1/76 (1%)
 Frame = +3

Query: 192 NQQERDRGGCHHHRDSSDGLCGVVGYIETPHGLR-ALLTVWAEHMSEDCRRRFYKNWYXX 368
           ++ +R     H  R  S G  G  G I TP G+R A +T W          + Y+N Y  
Sbjct: 74  SEDDRSSSSSHVLRSESSGSLGGSGQI-TPSGVRRAQVTSWLRSQPSYTFHKPYRNRYPR 132

Query: 369 XXXXXXXXXXXWQDEL 416
                      WQ +L
Sbjct: 133 QRVVVNGMDKQWQADL 148


>SB_28392| Best HMM Match : Exo_endo_phos (HMM E-Value=0.77)
          Length = 549

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
 Frame = +1

Query: 163 VREPXRPGSKINKKEIVEAVTIIETPP--------MVCVVLLDTLRPL 282
           +R+P R   K  KKE     +++++PP        MV V L+  +RPL
Sbjct: 81  IRKPPRSKRKQKKKETANHTSVVDSPPSDRPRNTRMVPVTLMANVRPL 128


>SB_25655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 325

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = +1

Query: 4   RKFSAPRHGSMGFYPKKRSRRHRGK-VKAFPKDDPSKPVH 120
           R+F  P+ G +G Y ++  R H GK +   PK +P +  +
Sbjct: 145 RRFWMPKFGHVGPYSEQVKRDHDGKIIDIIPKGNPMEDAY 184


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,174,602
Number of Sequences: 59808
Number of extensions: 485085
Number of successful extensions: 1084
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2203769656
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)