Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0442.Seq
         (799 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcript...    25   3.6  
AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcript...    25   3.6  
AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1 pr...    24   6.3  

>AB090819-2|BAC57914.1| 1022|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1022

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 285 GLRALLTVWAEHMSEDCRRRFYK 353
           G+R   ++WAE +  +CR+++ +
Sbjct: 770 GIRYASSIWAESLKFECRKQWLR 792


>AB090814-2|BAC57904.1| 1049|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1049

 Score = 24.6 bits (51), Expect = 3.6
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -1

Query: 586 LAPFHFVLDGTTVKLDFHNVXXXXXLFNSFI*VWAMTLT 470
           L  FH +LD    +LD H        FN++   W    T
Sbjct: 93  LERFHVMLDNLVAELDGHRPLVIAGDFNAWAVEWGSKRT 131


>AJ271193-1|CAB66001.1| 1623|Anopheles gambiae laminin gamma 1
           precursor protein.
          Length = 1623

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
 Frame = +2

Query: 455 PLL*CCKSHCPHSNEAVKQRQKKAHIMEIQLNGGTIEDKVK--WGQRTSGXTYPCRFCVC 628
           P + C    C    E       +  I +    G T +   K  +G    G  Y C+ C C
Sbjct: 720 PFMPCVPCDCNKHAEICDSETGRC-ICQHNTAGDTCDQCAKGYYGNALGGTPYDCKRCPC 778

Query: 629 P 631
           P
Sbjct: 779 P 779


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 804,001
Number of Sequences: 2352
Number of extensions: 16211
Number of successful extensions: 22
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 83992206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)