Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0442.Seq
(799 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal prote... 158 4e-39
Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal prote... 158 4e-39
Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical p... 158 4e-39
Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical pr... 158 4e-39
Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical p... 155 3e-38
Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical pr... 155 3e-38
Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical p... 103 1e-22
Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical pr... 103 1e-22
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr... 31 0.96
AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical ... 31 1.3
>Z69337-1|CAA93269.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 158 bits (384), Expect = 4e-39
Identities = 82/172 (47%), Positives = 102/172 (59%), Gaps = 1/172 (0%)
Frame = +3
Query: 249 LCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKS 428
+ GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K
Sbjct: 86 IAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKL 145
Query: 429 IEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPI 608
IE DF K+ +YCS +RVIAHTQMK+L +++ L + + K + AREHLE +
Sbjct: 146 IEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Query: 609 PVDSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIGA 761
VD+VFAQDEM D IGVT G + VTSR H P T CIGA
Sbjct: 206 QVDTVFAQDEMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTHKGLRKVACIGA 256
Score = 155 bits (376), Expect = 3e-38
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ +
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDK 62
Query: 181 PGSKINKKEIVEAVTIIETPPMV 249
PGSK+NKKE+VEAVTI+ETPPMV
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMV 85
>Z69336-1|CAA93268.1| 401|Caenorhabditis elegans ribosomal protein
L3 protein.
Length = 401
Score = 158 bits (384), Expect = 4e-39
Identities = 82/172 (47%), Positives = 102/172 (59%), Gaps = 1/172 (0%)
Frame = +3
Query: 249 LCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKS 428
+ GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K
Sbjct: 86 IAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKL 145
Query: 429 IEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPI 608
IE DF K+ +YCS +RVIAHTQMK+L +++ L + + K + AREHLE +
Sbjct: 146 IEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Query: 609 PVDSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIGA 761
VD+VFAQDEM D IGVT G + VTSR H P T CIGA
Sbjct: 206 QVDTVFAQDEMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTHKGLRKVACIGA 256
Score = 155 bits (376), Expect = 3e-38
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ +
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDK 62
Query: 181 PGSKINKKEIVEAVTIIETPPMV 249
PGSK+NKKE+VEAVTI+ETPPMV
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMV 85
>Z66495-12|CAA91277.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 158 bits (384), Expect = 4e-39
Identities = 82/172 (47%), Positives = 102/172 (59%), Gaps = 1/172 (0%)
Frame = +3
Query: 249 LCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKS 428
+ GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K
Sbjct: 86 IAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKL 145
Query: 429 IEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPI 608
IE DF K+ +YCS +RVIAHTQMK+L +++ L + + K + AREHLE +
Sbjct: 146 IEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Query: 609 PVDSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIGA 761
VD+VFAQDEM D IGVT G + VTSR H P T CIGA
Sbjct: 206 QVDTVFAQDEMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTHKGLRKVACIGA 256
Score = 155 bits (376), Expect = 3e-38
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ +
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDK 62
Query: 181 PGSKINKKEIVEAVTIIETPPMV 249
PGSK+NKKE+VEAVTI+ETPPMV
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMV 85
>Z49936-6|CAA90183.1| 401|Caenorhabditis elegans Hypothetical
protein F13B10.2a protein.
Length = 401
Score = 158 bits (384), Expect = 4e-39
Identities = 82/172 (47%), Positives = 102/172 (59%), Gaps = 1/172 (0%)
Frame = +3
Query: 249 LCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKS 428
+ GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K
Sbjct: 86 IAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKL 145
Query: 429 IEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPI 608
IE DF K+ +YCS +RVIAHTQMK+L +++ L + + K + AREHLE +
Sbjct: 146 IEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDWAREHLEKQV 205
Query: 609 PVDSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIGA 761
VD+VFAQDEM D IGVT G + VTSR H P T CIGA
Sbjct: 206 QVDTVFAQDEMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTHKGLRKVACIGA 256
Score = 155 bits (376), Expect = 3e-38
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ +
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDK 62
Query: 181 PGSKINKKEIVEAVTIIETPPMV 249
PGSK+NKKE+VEAVTI+ETPPMV
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMV 85
>Z66495-14|CAH04729.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 155 bits (376), Expect = 3e-38
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ +
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDK 62
Query: 181 PGSKINKKEIVEAVTIIETPPMV 249
PGSK+NKKE+VEAVTI+ETPPMV
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMV 85
Score = 107 bits (256), Expect = 1e-23
Identities = 46/83 (55%), Positives = 56/83 (67%)
Frame = +3
Query: 249 LCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKS 428
+ GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K
Sbjct: 86 IAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKL 145
Query: 429 IEKDFKKMIRYCSVVRVIAHTQM 497
IE DF K+ +YCS +RVIAHTQM
Sbjct: 146 IEADFAKLKKYCSSIRVIAHTQM 168
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 621 VFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIGA 761
V A +M D IGVT G + VTSR H P T CIGA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTHKGLRKVACIGA 208
>Z49936-7|CAH10799.1| 353|Caenorhabditis elegans Hypothetical
protein F13B10.2c protein.
Length = 353
Score = 155 bits (376), Expect = 3e-38
Identities = 66/83 (79%), Positives = 77/83 (92%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
HRKFSAPRHG MGF PKKRSR +RG++KAFPKDD SKP+HLTAF+GYKAGMTH+VR+ +
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFPKDDKSKPIHLTAFLGYKAGMTHIVRDVDK 62
Query: 181 PGSKINKKEIVEAVTIIETPPMV 249
PGSK+NKKE+VEAVTI+ETPPMV
Sbjct: 63 PGSKVNKKEVVEAVTIVETPPMV 85
Score = 107 bits (256), Expect = 1e-23
Identities = 46/83 (55%), Positives = 56/83 (67%)
Frame = +3
Query: 249 LCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKS 428
+ GV GY++TP G RAL T+WAEH+SE+ RRRFY NW WQDE G+K
Sbjct: 86 IAGVTGYVDTPQGPRALTTIWAEHLSEEARRRFYSNWAKSKKKAFTKYAKKWQDEDGKKL 145
Query: 429 IEKDFKKMIRYCSVVRVIAHTQM 497
IE DF K+ +YCS +RVIAHTQM
Sbjct: 146 IEADFAKLKKYCSSIRVIAHTQM 168
Score = 29.9 bits (64), Expect = 2.2
Identities = 20/48 (41%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = +3
Query: 621 VFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIGA 761
V A +M D IGVT G + VTSR H P T CIGA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTHKGLRKVACIGA 208
>Z66495-15|CAH04728.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 103 bits (248), Expect = 1e-22
Identities = 58/121 (47%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Frame = +3
Query: 402 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NG 581
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L +++ L + + K +
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 582 AREHLEXPIPVDSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIG 758
AREHLE + VD+VFAQDEM D IGVT G + VTSR H P T CIG
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTHKGLRKVACIG 157
Query: 759 A 761
A
Sbjct: 158 A 158
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 96
HRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z49936-8|CAH10798.1| 303|Caenorhabditis elegans Hypothetical
protein F13B10.2d protein.
Length = 303
Score = 103 bits (248), Expect = 1e-22
Identities = 58/121 (47%), Positives = 72/121 (59%), Gaps = 1/121 (0%)
Frame = +3
Query: 402 WQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLNSDKRRLTLWKSNLTVVPSRTK*NG 581
WQDE G+K IE DF K+ +YCS +RVIAHTQMK+L +++ L + + K +
Sbjct: 39 WQDEDGKKLIEADFAKLKKYCSSIRVIAHTQMKILRRRQKKAHLVEIQVNGGTIEQKVDW 98
Query: 582 AREHLEXPIPVDSVFAQDEMXDCIGVTXGPRYXXVTSRXXHQXATPLXTQXA*XS-CCIG 758
AREHLE + VD+VFAQDEM D IGVT G + VTSR H P T CIG
Sbjct: 99 AREHLEKQVQVDTVFAQDEMIDTIGVTRGHGFKGVTSR-WHTKKLPRKTHKGLRKVACIG 157
Query: 759 A 761
A
Sbjct: 158 A 158
Score = 60.1 bits (139), Expect = 2e-09
Identities = 25/32 (78%), Positives = 28/32 (87%)
Frame = +1
Query: 1 HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPK 96
HRKFSAPRHG MGF PKKRSR +RG++KAF K
Sbjct: 3 HRKFSAPRHGHMGFTPKKRSRTYRGRIKAFTK 34
>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical protein
F54F3.1 protein.
Length = 1584
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 2/44 (4%)
Frame = -2
Query: 372 SCICTSFCRSDVDSLQTYAPPRQS--KERVVHEGSQCIQQHHTN 247
+C C + D S YAP + R+ H +QC+ H TN
Sbjct: 1134 ACKCVDGFKGDGTSCVPYAPATNCNLEPRICHANAQCVMHHDTN 1177
>AF003146-5|AAB54199.1| 299|Caenorhabditis elegans Hypothetical
protein F56F4.2 protein.
Length = 299
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/40 (30%), Positives = 20/40 (50%)
Frame = +3
Query: 243 DGLCGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWY 362
+G + GY++ G+R VW E S+ + KNW+
Sbjct: 204 NGYFDIAGYVDQSSGVRGRFWVWHECFSQKYHKDPCKNWF 243
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,757,742
Number of Sequences: 27780
Number of extensions: 361398
Number of successful extensions: 900
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 886
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1945792630
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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