Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0442.Seq
         (799 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    23   2.5  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   3.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    22   7.6  

>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 23.4 bits (48), Expect = 2.5
 Identities = 12/45 (26%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 673 LGPLVTPMQSXISSWANTESTGIGXSRCSL-APFHFVLDGTTVKL 542
           +GP   P Q  + S+A ++ T +G    S       +L  TT+ +
Sbjct: 273 VGPACLPFQHFLDSFAGSDVTVLGWGHTSFNGMLSHILQKTTLNM 317


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 227 MVTASTISFLLIFEPGRSGSLTTWVI 150
           MV   TI +++IF  G  G++TT  +
Sbjct: 39  MVIPLTIIYMIIFVTGIFGNITTCTV 64


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +1

Query: 136 GYKAGMTHVVREPXRPGSKINKKEI 210
           GY + M+    +P  P SKI + E+
Sbjct: 131 GYASPMSTSSYDPYSPNSKIGRDEL 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 215,175
Number of Sequences: 438
Number of extensions: 4164
Number of successful extensions: 12
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25246416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)