Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0442.Seq
         (799 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identi...   145   3e-35
At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identi...   139   2e-33
At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identi...   139   2e-33
At1g29195.1 68414.m03572 expressed protein                             30   2.0  
At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar...    29   4.7  
At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family prote...    28   6.2  

>At1g61580.1 68414.m06939 60S ribosomal protein L3 (RPL3B) identical
           to ribosomal protein GI:806279 from [Arabidopsis
           thaliana]
          Length = 390

 Score =  145 bits (352), Expect = 3e-35
 Identities = 63/85 (74%), Positives = 74/85 (87%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           HRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDDP+KP  LT+F+GYKAGMTH+VR+  +
Sbjct: 3   HRKFEHPRHGSLGFLPRKRASRHRGKVKAFPKDDPTKPCRLTSFLGYKAGMTHIVRDVEK 62

Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
           PGSK++KKE  EAVTIIETPPMV V
Sbjct: 63  PGSKLHKKETCEAVTIIETPPMVVV 87



 Score =  126 bits (303), Expect = 2e-29
 Identities = 63/148 (42%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
 Frame = +3

Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
           GVVGY++TP GLR+L TVWA+H+SE+ RRRFYKNW               + E G+K I+
Sbjct: 88  GVVGYVKTPRGLRSLCTVWAQHLSEELRRRFYKNWAKSKKKAFTRYSKKHETEEGKKDIQ 147

Query: 435 KDFKKMIRYCSVVRVIAHTQM-KLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPIP 611
              +KM +YCSV+RV+AHTQ+ K+    +++  L +  +       K + A    E  +P
Sbjct: 148 SQLEKMKKYCSVIRVLAHTQIRKMKGLKQKKAHLNEIQINGGDIAKKVDYACSLFEKQVP 207

Query: 612 VDSVFAQDEMXDCIGVTXGPRYXXVTSR 695
           VD++F +DEM D IGVT G  Y  V +R
Sbjct: 208 VDAIFQKDEMIDIIGVTKGKGYEGVVTR 235


>At1g43170.2 68414.m04975 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  139 bits (337), Expect = 2e-33
 Identities = 62/85 (72%), Positives = 71/85 (83%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           HRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE  +
Sbjct: 3   HRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEK 62

Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
           PGSK++KKE  EAVTIIETP MV V
Sbjct: 63  PGSKLHKKETCEAVTIIETPAMVVV 87



 Score =  118 bits (285), Expect = 3e-27
 Identities = 59/148 (39%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
 Frame = +3

Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
           GVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW              +  E G+K I+
Sbjct: 88  GVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQ 147

Query: 435 KDFKKMIRYCSVVRVIAHTQM-KLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPIP 611
              +KM +Y +V+RV+AHTQ+ K+    +++  + +  +       K + A    E  IP
Sbjct: 148 AQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIP 207

Query: 612 VDSVFAQDEMXDCIGVTXGPRYXXVTSR 695
           +++VF +DEM D IGVT G  Y  V +R
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTR 235


>At1g43170.1 68414.m04974 60S ribosomal protein L3 (RPL3A) identical
           to ribosomal protein GI:166858 from [Arabidopsis
           thaliana]
          Length = 389

 Score =  139 bits (337), Expect = 2e-33
 Identities = 62/85 (72%), Positives = 71/85 (83%)
 Frame = +1

Query: 1   HRKFSAPRHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPXR 180
           HRKF  PRHGS+GF P+KR+ RHRGKVKAFPKDD +KP   TAF+GYKAGMTH+VRE  +
Sbjct: 3   HRKFEHPRHGSLGFLPRKRANRHRGKVKAFPKDDQTKPCKFTAFMGYKAGMTHIVREVEK 62

Query: 181 PGSKINKKEIVEAVTIIETPPMVCV 255
           PGSK++KKE  EAVTIIETP MV V
Sbjct: 63  PGSKLHKKETCEAVTIIETPAMVVV 87



 Score =  118 bits (285), Expect = 3e-27
 Identities = 59/148 (39%), Positives = 87/148 (58%), Gaps = 1/148 (0%)
 Frame = +3

Query: 255 GVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXXXXXXXXXXXXXWQDELGRKSIE 434
           GVV Y++TP GLR+L TVWA+H+SE+ RRRFYKNW              +  E G+K I+
Sbjct: 88  GVVAYVKTPRGLRSLNTVWAQHLSEEVRRRFYKNWAKSKKKAFTGYAKQYDSEDGKKGIQ 147

Query: 435 KDFKKMIRYCSVVRVIAHTQM-KLLNSDKRRLTLWKSNLTVVPSRTK*NGAREHLEXPIP 611
              +KM +Y +V+RV+AHTQ+ K+    +++  + +  +       K + A    E  IP
Sbjct: 148 AQLEKMKKYATVIRVLAHTQIRKMKGLKQKKAHMMEIQINGGTIAQKVDFAYSFFEKQIP 207

Query: 612 VDSVFAQDEMXDCIGVTXGPRYXXVTSR 695
           +++VF +DEM D IGVT G  Y  V +R
Sbjct: 208 IEAVFQKDEMIDIIGVTKGKGYEGVVTR 235


>At1g29195.1 68414.m03572 expressed protein
          Length = 193

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 13/41 (31%), Positives = 24/41 (58%)
 Frame = +1

Query: 121 LTAFIGYKAGMTHVVREPXRPGSKINKKEIVEAVTIIETPP 243
           +TA    KA   HV+++P  P S  ++++++ A  I+  PP
Sbjct: 37  ITASEIMKAHPKHVLKKPSSPTSDHDERDVISATKIVIVPP 77


>At5g42250.1 68418.m05143 alcohol dehydrogenase, putative similar to
           alcohol dehydrogenase ADH GI:7705214 from [Lycopersicon
           esculentum]; contains Pfam zinc-binding dehydrogenase
           domain PF00107
          Length = 390

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 16/58 (27%), Positives = 27/58 (46%)
 Frame = -2

Query: 366 ICTSFCRSDVDSLQTYAPPRQSKERVVHEGSQCIQQHHTNHRRSLDDGDSLHDLFLVD 193
           ICT+ C SDV   +   PP      + HE    ++    N +  + +GD++   F+ D
Sbjct: 51  ICTALCHSDVTFWKLQVPPACFPRILGHEAIGVVESVGENVKEVV-EGDTVLPTFMPD 107


>At1g15490.1 68414.m01864 hydrolase, alpha/beta fold family protein
           Contains PF 00561 alpha/beta hydrolase fold
          Length = 648

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/45 (40%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
 Frame = -2

Query: 261 QHHTNHR--RSLDDGDSLHDLFLVDF*TGTXRFSNHVGHTGLITD 133
           QHH +HR   SL +  SLHD  L    T    F      TGL+ D
Sbjct: 304 QHHHHHRSYNSLFNNSSLHDPLLDGSPTSPLLFKEIKEGTGLVDD 348


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,920,678
Number of Sequences: 28952
Number of extensions: 339891
Number of successful extensions: 838
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 831
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1804564000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)