Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0439.Seq
         (908 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory recept...    26   0.47 
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   3.3  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.6  

>AM292382-1|CAL23194.2|  670|Tribolium castaneum gustatory receptor
           candidate 61 protein.
          Length = 670

 Score = 25.8 bits (54), Expect = 0.47
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +2

Query: 110 LNQKKIRTALNWIKQIVQRLCPLMTINGKFTFYQTTYRS 226
           LN  + R  LNW+ +++ R  P +    +    Q T+R+
Sbjct: 590 LNSNEARATLNWVSKLIIRSNPSLEEKLQIFALQLTHRA 628


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 151  FYPI*SCSNFFLI*NVMIL*ENLVP 77
            +YP  SCS+F++  N  ++ +N  P
Sbjct: 1212 YYPHESCSSFYVCVNGHLVPQNCAP 1236


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 192 PFIVIKGHNLCTIC 151
           PF++  G + CT+C
Sbjct: 764 PFLIPTGFDSCTVC 777


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 208,407
Number of Sequences: 336
Number of extensions: 4411
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25341085
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)