Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0439.Seq
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    30   0.39 
SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    29   0.69 
SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomy...    29   0.91 
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    29   1.2  
SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr...    28   2.1  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   2.1  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    27   3.7  
SPCC1322.12c |bub1||serine/threonine protein kinase Bub1|Schizos...    27   4.9  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   6.4  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    26   6.4  
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c...    26   6.4  
SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   8.5  
SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyce...    26   8.5  
SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase |Sc...    26   8.5  
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   8.5  

>SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1205

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 1/94 (1%)
 Frame = +3

Query: 198  SPFTKQHTEVFASLQTKIIQVYTPSSLSKESTPERNFNERVEAFNKINVKSNALNSMRSS 377
            S F KQ T   A+L+ K     T SS S + +  R  NE+    N+ N     +    SS
Sbjct: 1113 SSFAKQTTNKHANLKQK----KTHSSKSDKKSSRRRKNEKRRKLNEQNPNIRNVPERSSS 1168

Query: 378  LDSDIRIGHLSSSVISRTLSNATDYM-KKDYKEV 476
                IRI +  +   S  +S   + + ++D+ E+
Sbjct: 1169 RFQGIRINYSEAPSSSEEISEEEEEISEEDFDEI 1202


>SPBC1685.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 325

 Score = 29.5 bits (63), Expect = 0.69
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +3

Query: 234 SLQTKIIQVYTPSSLSKESTPERNFNERVEAFNKINVKSNALNSMRSSLDSD 389
           +++TK+I +  P+SLS+ + P     +R    + +    ++L S R   DS+
Sbjct: 244 AVETKLISILGPTSLSEAALPPLTDVQRTSVLSLLTSTLHSLESARQIADSN 295


>SPBC32F12.08c |duo1||DASH complex subunit Duo1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 166

 Score = 29.1 bits (62), Expect = 0.91
 Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +3

Query: 270 SSLSKESTPERNFNERVEAFNK-INVKSNALNSMRSSLDSDIRIGHLSSSVISRTLSNAT 446
           S L +E    R+FN  +E     ++     + S  +S+++  R+  L SSV+S+T     
Sbjct: 3   SELQQELQILRSFNYTIEKLTDGLSASKEKIKSFETSINNSNRLIQLWSSVLSQTEHTQN 62

Query: 447 DYMKKDYK 470
             +  D+K
Sbjct: 63  LILNSDWK 70


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 16/72 (22%), Positives = 36/72 (50%)
 Frame = +3

Query: 270 SSLSKESTPERNFNERVEAFNKINVKSNALNSMRSSLDSDIRIGHLSSSVISRTLSNATD 449
           + +  +++ E+N    + + N + ++  + + ++ SLDS ++     ++VI  T  + T 
Sbjct: 591 NEIESQASFEQNQTLDILSENIVEIQDKSTDPLQKSLDSSLKSHLPEATVIQNTDGSVTV 650

Query: 450 YMKKDYKEVINY 485
                Y EVI Y
Sbjct: 651 NSLTVYPEVIGY 662


>SPAC25B8.06c |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 454

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 405 LSSSVISRTLSNATDYMKKDYKEVINYAREFKNVE 509
           +S  +  RT S  T Y++  ++ ++NY   ++N E
Sbjct: 1   MSQLLYLRTFSTHTSYLRSSWQAILNYKYIYQNAE 35


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 25/84 (29%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
 Frame = +3

Query: 189 MESSPFTKQHTEVF-ASLQTKIIQVYTPSSLSKESTPERNFNERVEAFNKINVKSNALNS 365
           + SS FT   +  F  SL +   Q  + SS S  S+          A    +  S+AL+S
Sbjct: 66  LSSSSFTSPASSSFITSLVSSSSQQSSSSSASLTSSSSATLTSSSSASPTSSSSSHALSS 125

Query: 366 MRSSLDSDIRIGHLSSSVISRTLS 437
             SSL +      +SSS +S + S
Sbjct: 126 SSSSLVASSSSSGMSSSSLSHSSS 149


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = +2

Query: 80  YKILLQNH-YILNQKKIRTALNWIKQIVQRLCPLMTINGKFTFYQTTYRSIR 232
           +++LL  + YI+  + + + + WI  I+     +     K T   TTY S R
Sbjct: 516 FQVLLTTYEYIIKDRPLLSRIKWIYMIIDEGHRMKNTQSKLTNTLTTYYSSR 567


>SPCC1322.12c |bub1||serine/threonine protein kinase
           Bub1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1044

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -2

Query: 400 PILISESREDLIEFSAFDFTLILLNASTRSLK 305
           P+L  +S    +E+SAF+F  +  N   RS++
Sbjct: 256 PLLYDKSSGKRVEYSAFNFLALYENGEERSME 287


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 559 GRIIIAIHNVRSSTHFNSTFLNSLA*LITSL*SFFI*SV 443
           G+I+  +HN+   +  +  F ++LA + +S   +FI SV
Sbjct: 335 GKIVFLVHNIDGESLIDERFQSALAAIASSKNVYFIASV 373


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +1

Query: 58  VDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDN 186
           VDL   K+ + LTK LH        +S+  K NS  +    DN
Sbjct: 338 VDLETPKLVEELTKQLHVAESTLKENSEKFKQNSESLKSRVDN 380


>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 303

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 729 DLSNCVGXVPYIRFYYRIGGIK*YFWG 649
           ++  C G +  +RF Y  GGI  +F G
Sbjct: 242 EVRKCKGSLDVVRFIYNYGGIPSFFKG 268


>SPBC1539.02 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 386

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 17/68 (25%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
 Frame = +1

Query: 70  EIKVQDSLTKSLHFKSEKNSNS---SKLDKTNSTKIVPLNDNKWKVHLLPNNIPKYSPAF 240
           E+ + DSL  S   + ++ ++       ++++  + V + + K K+ L PN  PKY    
Sbjct: 138 ELALDDSLLSSSEKEVDEEADKLLEKVAEESSHPESVSILEEKKKIPLYPNGQPKYRKIL 197

Query: 241 KR-KSFKY 261
           +  K  KY
Sbjct: 198 ENGKKVKY 205


>SPBP8B7.18c |||phosphomethylpyrimidine kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 551

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 8/17 (47%), Positives = 14/17 (82%)
 Frame = +3

Query: 447 DYMKKDYKEVINYAREF 497
           DY+K+DY  ++N+AR +
Sbjct: 361 DYLKQDYLYLVNFARAY 377


>SPAC3C7.01c ||SPAC732.03c|inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
 Frame = +3

Query: 588 PQLPLQWHTIENIESGWCTFIPKNITLFHLFGN-KI*CR 701
           P LPL++H    +  G   F    +T+  LFGN  + CR
Sbjct: 509 PDLPLRFHWTRFVAPGIFLFTTIILTIQELFGNPSLFCR 547


>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 687

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +3

Query: 225 VFASLQTKIIQVYTPSSLSKESTPE 299
           +F  L  K+I+V T S LS E  PE
Sbjct: 421 LFLWLTIKVIRVITTSGLSNEDNPE 445


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,681,204
Number of Sequences: 5004
Number of extensions: 77000
Number of successful extensions: 268
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 268
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)