Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0439.Seq
         (908 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0588 - 20842209-20842337,20842464-20842560,20842620-208427...    33   0.31 
03_02_0445 - 8551912-8552047,8552729-8552896,8553785-8554068,855...    30   2.9  
12_01_0988 - 10039187-10039243,10039356-10039649,10039838-100402...    29   3.9  
03_05_0478 - 24712157-24712177,24712206-24712260,24712377-247124...    29   5.1  
09_06_0134 + 21065104-21065965,21066732-21066961,21067618-210678...    29   6.7  

>12_02_0588 -
           20842209-20842337,20842464-20842560,20842620-20842733,
           20843140-20843749,20844739-20845462,20845542-20845620,
           20845783-20845865,20846148-20846226,20846332-20846420,
           20846499-20846591,20847288-20847337,20847417-20847600,
           20849227-20849542,20849626-20849657
          Length = 892

 Score = 33.1 bits (72), Expect = 0.31
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 64  LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIV 171
           +P++K++ +   SLHFK     N++K D    TK+V
Sbjct: 510 IPKVKIKGTKVPSLHFKDVGEENAAKSDTGKGTKLV 545


>03_02_0445 -
           8551912-8552047,8552729-8552896,8553785-8554068,
           8554143-8555386,8556901-8556967,8557059-8557150,
           8557269-8557480,8558541-8558623,8559092-8559122,
           8559770-8559951,8560557-8560616,8561092-8561289,
           8561485-8561539,8562740-8562855,8563012-8563176,
           8563310-8563483,8564134-8564333,8564778-8564882,
           8565063-8565126,8566452-8566718
          Length = 1300

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = -2

Query: 430 VLEMTEDDKWPILISESREDLIEFSAFDFTLILLNASTRSLKLRSGVDSLDNDEGV 263
           +L+M E  KWPI+++ +++D          L+L      S +L S VD +   EGV
Sbjct: 621 ILKMVETTKWPIILTSNKKD-PPLPHLLAQLVLDFTYPSSAELLSHVDMICKSEGV 675


>12_01_0988 -
           10039187-10039243,10039356-10039649,10039838-10040202,
           10042916-10042931
          Length = 243

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +1

Query: 19  LKDLVIPEVRGPIVDLPEIKVQ-DSLTKSLHFKSEKNSNSSKLDKT 153
           +KD + PEV G I+D  +IK    ++ +S  F  E ++N+ K + T
Sbjct: 87  VKDAISPEVIGGIIDSNDIKTYLANIEESFEFAPEAHANTLKEEWT 132


>03_05_0478 -
           24712157-24712177,24712206-24712260,24712377-24712473,
           24712558-24713302,24713822-24714189,24714279-24714419,
           24715480-24715849
          Length = 598

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 19/61 (31%), Positives = 36/61 (59%)
 Frame = +3

Query: 279 SKESTPERNFNERVEAFNKINVKSNALNSMRSSLDSDIRIGHLSSSVISRTLSNATDYMK 458
           S +S  +R  NE++   +K+ V S+A+  +R   D+D+ + + SSSV+   L +A +  +
Sbjct: 383 SLQSDIDRFINEKIVVADKVIV-SHAITKVR---DNDVLLTYGSSSVVEMILDHAHELGR 438

Query: 459 K 461
           K
Sbjct: 439 K 439


>09_06_0134 +
           21065104-21065965,21066732-21066961,21067618-21067841,
           21067929-21068781
          Length = 722

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
 Frame = +3

Query: 330 NKINVKSNALN-SMRSSLDSDI--RIGHLSSSVISRTLSNATDYMKKDYKEVINYAREFK 500
           +++   SN+L+ + +S   SDI    G + S   S+TL     + KK Y+EV    +  +
Sbjct: 312 SELGASSNSLSWTDKSETKSDIFDDYGGMKSGSHSQTLGRLYAWEKKLYEEVKAIDQIRQ 371

Query: 501 NVELKCVLLR 530
             E KCV LR
Sbjct: 372 TYEKKCVQLR 381


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,328,928
Number of Sequences: 37544
Number of extensions: 432711
Number of successful extensions: 965
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 965
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2577242800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)