Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0439.Seq
         (908 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.060
SB_35159| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.9  
SB_31558| Best HMM Match : efhand (HMM E-Value=0.00017)                29   6.9  
SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)                   29   6.9  
SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)             28   9.1  

>SB_20424| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1711

 Score = 35.5 bits (78), Expect = 0.060
 Identities = 23/80 (28%), Positives = 41/80 (51%), Gaps = 2/80 (2%)
 Frame = +3

Query: 297  ERNFNERVEAFNKINVKSNALNSMRSSLDSDIRIGHLSSSVISRTLSNATDYMKKDYKEV 476
            ER   +  +   K+N++++ L+   SSL+S + I       +  T+  AT  + K Y E+
Sbjct: 996  ERELRDSQQENIKMNIENSKLSRKVSSLESSVEIFEKDKKNLRTTVIEATSKLSKMYTEL 1055

Query: 477  INYAREFK--NVELKCVLLR 530
             N  RE +   VE+K ++ R
Sbjct: 1056 ENEKRENEAFRVEVKDLMKR 1075


>SB_35159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 307

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
 Frame = +3

Query: 360 NSMRSSLDSDIRIGHLSSSVISRTLSNATDYMKKDYK-EVINYARE 494
           N  R+ +    R+GH+ + +      N+   +K+++K EVINYARE
Sbjct: 55  NGARNGISPPHRVGHMDAPI------NSNGQLKEEHKQEVINYARE 94


>SB_54431| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1023

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 85  DSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNNIPKYSPAFKRKS 252
           D +  +  F+S  N+   KL+   S +       +W  HL  N+I ++SPA KRK+
Sbjct: 179 DGVKAANDFRSRHNAPPLKLNAEMSKEA-----EEWAKHLSENDIFEHSPADKRKN 229


>SB_31558| Best HMM Match : efhand (HMM E-Value=0.00017)
          Length = 95

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -2

Query: 409 DKWPILISESREDLIEFSAFDFTLILLNASTRSLKLRSGVDSLDND 272
           D + IL  E +   +   AF F L  LNA  R  +LR   DSLD D
Sbjct: 7   DLFKILSPEKQSLSVSKEAFVFGLKRLNAPLRDDQLRVIFDSLDED 52


>SB_25556| Best HMM Match : rve (HMM E-Value=2.8e-17)
          Length = 735

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 19/46 (41%), Positives = 23/46 (50%)
 Frame = -2

Query: 409 DKWPILISESREDLIEFSAFDFTLILLNASTRSLKLRSGVDSLDND 272
           D + IL  E +   +   AF F L  LNA  R  +LR   DSLD D
Sbjct: 647 DLFKILSPEKQSLSVSKEAFVFGLKRLNAPLRDDQLRVIFDSLDED 692


>SB_14655| Best HMM Match : Ketoacyl-synt_C (HMM E-Value=0)
          Length = 2232

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 381 DSDIRIGHLSSSVISRTLSNATDYMKKDYKEVINYAREFKNVELKC 518
           D  +R G +  S+I   +   T  +K+D  +++N +R  KNV + C
Sbjct: 378 DIRVRKGVIVESLIHLPMRQVTSAVKRDLIQLLNRSRLTKNVMVLC 423


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,504,012
Number of Sequences: 59808
Number of extensions: 526043
Number of successful extensions: 1198
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1196
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2621784220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)