Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0439.Seq
         (908 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ168462-1|AAZ81896.1| 1842|Drosophila melanogaster PDZ domain-c...    35   0.18 
AE014296-2384|AAF49739.1| 1100|Drosophila melanogaster CG9598-PA...    35   0.18 
AY095185-1|AAM12278.1|  264|Drosophila melanogaster LD10447p pro...    31   2.9  
AE014296-1004|AAN12112.1|  264|Drosophila melanogaster CG32418-P...    31   2.9  
AY071629-1|AAL49251.1|  424|Drosophila melanogaster RE67594p pro...    30   5.0  
AY069595-1|AAL39740.1|  912|Drosophila melanogaster LD34564p pro...    30   5.0  
AY060893-1|AAL28441.1|  424|Drosophila melanogaster GM04690p pro...    30   5.0  
AE014296-567|AAF47719.1|  424|Drosophila melanogaster CG1291-PA ...    30   5.0  
AE013599-3574|AAF46982.2|  896|Drosophila melanogaster CG3502-PA...    30   5.0  
AJ441108-1|CAD29584.1| 1030|Drosophila melanogaster SMC5 protein...    29   6.7  

>DQ168462-1|AAZ81896.1| 1842|Drosophila melanogaster PDZ
            domain-containing proteinBBG-LP10 protein.
          Length = 1842

 Score = 34.7 bits (76), Expect = 0.18
 Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
 Frame = +1

Query: 1    KKSMSKLKDLVIPE---VRGPIVDLPEIKVQ 84
            ++S+SKL+ LVIPE   +  PI+DLPEIK Q
Sbjct: 1099 RRSLSKLRGLVIPERPQLLEPILDLPEIKSQ 1129


>AE014296-2384|AAF49739.1| 1100|Drosophila melanogaster CG9598-PA
           protein.
          Length = 1100

 Score = 34.7 bits (76), Expect = 0.18
 Identities = 18/31 (58%), Positives = 24/31 (77%), Gaps = 3/31 (9%)
 Frame = +1

Query: 1   KKSMSKLKDLVIPE---VRGPIVDLPEIKVQ 84
           ++S+SKL+ LVIPE   +  PI+DLPEIK Q
Sbjct: 357 RRSLSKLRGLVIPERPQLLEPILDLPEIKSQ 387


>AY095185-1|AAM12278.1|  264|Drosophila melanogaster LD10447p
           protein.
          Length = 264

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 64  LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNNIPKYSPAFK 243
           LP+IK +  L + +  K+ K  + SKL K      +   +N+ K     NN  K  P  +
Sbjct: 175 LPDIKSKKDLDRLMKTKTLKKMHQSKLFKQKER--LDKKNNQKKAKRDRNNTIKSVPKHQ 232

Query: 244 RKSFKY 261
           RK  KY
Sbjct: 233 RKQLKY 238


>AE014296-1004|AAN12112.1|  264|Drosophila melanogaster CG32418-PA
           protein.
          Length = 264

 Score = 30.7 bits (66), Expect = 2.9
 Identities = 21/66 (31%), Positives = 31/66 (46%)
 Frame = +1

Query: 64  LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNNIPKYSPAFK 243
           LP+IK +  L + +  K+ K  + SKL K      +   +N+ K     NN  K  P  +
Sbjct: 175 LPDIKSKKDLDRLMKTKTLKKMHQSKLFKQKER--LDKKNNQKKAKRDRNNTIKSVPKHQ 232

Query: 244 RKSFKY 261
           RK  KY
Sbjct: 233 RKQLKY 238


>AY071629-1|AAL49251.1|  424|Drosophila melanogaster RE67594p
           protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 89  LLQNHYILNQKKIRTALNWIKQIVQRLCPLMTINGKFTF--YQTTYRSIRQPSNENHSSI 262
           LL +   L ++  R  +NW+++    L   + +N KFT   +Q T+R +    +  + S+
Sbjct: 132 LLSSREGLLKRLYRLPINWLEEHTIGLADKVLVNSKFTLRVFQDTFRRLSTVPDVLYPSL 191

Query: 263 HS 268
           H+
Sbjct: 192 HT 193


>AY069595-1|AAL39740.1|  912|Drosophila melanogaster LD34564p
           protein.
          Length = 912

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 55  IVDLPEIKVQDSLTK-SLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNNIPKYS 231
           I+ L    V+D + K  +HFK+  N + S   K+N T IV       +VH L   + ++S
Sbjct: 109 ILHLGRELVKDQIYKLEMHFKAGLNDSQSGYYKSNYTDIVTK-----EVHHLA--VTQFS 161

Query: 232 PAFKRKSF 255
           P F R++F
Sbjct: 162 PTFARQAF 169


>AY060893-1|AAL28441.1|  424|Drosophila melanogaster GM04690p
           protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 89  LLQNHYILNQKKIRTALNWIKQIVQRLCPLMTINGKFTF--YQTTYRSIRQPSNENHSSI 262
           LL +   L ++  R  +NW+++    L   + +N KFT   +Q T+R +    +  + S+
Sbjct: 132 LLSSREGLLKRLYRLPINWLEEHTIGLADKVLVNSKFTLRVFQDTFRRLSTVPDVLYPSL 191

Query: 263 HS 268
           H+
Sbjct: 192 HT 193


>AE014296-567|AAF47719.1|  424|Drosophila melanogaster CG1291-PA
           protein.
          Length = 424

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 89  LLQNHYILNQKKIRTALNWIKQIVQRLCPLMTINGKFTF--YQTTYRSIRQPSNENHSSI 262
           LL +   L ++  R  +NW+++    L   + +N KFT   +Q T+R +    +  + S+
Sbjct: 132 LLSSREGLLKRLYRLPINWLEEHTIGLADKVLVNSKFTLRVFQDTFRRLSTVPDVLYPSL 191

Query: 263 HS 268
           H+
Sbjct: 192 HT 193


>AE013599-3574|AAF46982.2|  896|Drosophila melanogaster CG3502-PA
           protein.
          Length = 896

 Score = 29.9 bits (64), Expect = 5.0
 Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = +1

Query: 55  IVDLPEIKVQDSLTK-SLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNNIPKYS 231
           I+ L    V+D + K  +HFK+  N + S   K+N T IV       +VH L   + ++S
Sbjct: 109 ILHLGRELVKDQIYKLEMHFKAGLNDSQSGYYKSNYTDIVTK-----EVHHLA--VTQFS 161

Query: 232 PAFKRKSF 255
           P F R++F
Sbjct: 162 PTFARQAF 169


>AJ441108-1|CAD29584.1| 1030|Drosophila melanogaster SMC5 protein
           protein.
          Length = 1030

 Score = 29.5 bits (63), Expect = 6.7
 Identities = 18/70 (25%), Positives = 34/70 (48%)
 Frame = +3

Query: 312 ERVEAFNKINVKSNALNSMRSSLDSDIRIGHLSSSVISRTLSNATDYMKKDYKEVINYAR 491
           +RV+ F+K+N +   LN+M S  D D+     S   +    +N     +K+  +++   +
Sbjct: 146 DRVQDFSKMNPQELLLNTMSSVCDEDLINSFNSLKQMRTEQANVHANREKEKSDLVKKQK 205

Query: 492 EFKNVELKCV 521
             + V  KCV
Sbjct: 206 RLEQV-TKCV 214


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 38,007,060
Number of Sequences: 53049
Number of extensions: 766054
Number of successful extensions: 1929
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1927
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4443987051
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)