Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0439.Seq
(908 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical ... 31 0.86
AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical ... 31 0.86
AF067215-1|AAC17011.1| 495|Caenorhabditis elegans Hypothetical ... 31 1.5
AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol 1,4,... 30 2.6
AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol 1,4,... 30 2.6
AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol 1,4,... 30 2.6
AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol 1,4,... 30 2.6
AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol 1,4,... 30 2.6
AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol trip... 30 2.6
AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol trip... 30 2.6
AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol trip... 30 2.6
AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol trip... 30 2.6
Z79602-1|CAB01888.3| 508|Caenorhabditis elegans Hypothetical pr... 29 4.6
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 8.0
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 8.0
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 8.0
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 8.0
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 8.0
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 8.0
>AL110490-7|CAD59175.1| 533|Caenorhabditis elegans Hypothetical
protein Y48B6A.6b protein.
Length = 533
Score = 31.5 bits (68), Expect = 0.86
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 31 VIPE--VRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPL 177
VIP+ V P + + + D + K+L K E+N+N++ + +NST PL
Sbjct: 34 VIPQKIVENPYIPSVDTSIDDLIFKALE-KKEENNNNNNNNNSNSTTTTPL 83
>AL110490-6|CAB54442.2| 687|Caenorhabditis elegans Hypothetical
protein Y48B6A.6a protein.
Length = 687
Score = 31.5 bits (68), Expect = 0.86
Identities = 17/51 (33%), Positives = 29/51 (56%), Gaps = 2/51 (3%)
Frame = +1
Query: 31 VIPE--VRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPL 177
VIP+ V P + + + D + K+L K E+N+N++ + +NST PL
Sbjct: 34 VIPQKIVENPYIPSVDTSIDDLIFKALE-KKEENNNNNNNNNSNSTTTTPL 83
>AF067215-1|AAC17011.1| 495|Caenorhabditis elegans Hypothetical
protein ZK380.2 protein.
Length = 495
Score = 30.7 bits (66), Expect = 1.5
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Frame = +3
Query: 189 MESSPFTKQ-HTEVFASLQTK-IIQVYTPSSLSKESTPERNFNERV-EAFNKINVKSNAL 359
M + PF + T +F K +Q Y P+ ++S + V EA + K +
Sbjct: 73 MAAVPFEARIQTPMFYLTSIKWFMQTYVPNYSQEQSELLEQIIKNVDEAVKGLMKKDEEI 132
Query: 360 NSMRSSLDSDIRIGHLSSSVISRTLSNATDYMKKDYKEV 476
+++ L + ++ H+SS IS + S +D +DY V
Sbjct: 133 AGLKAQLQAAVQAEHVSSCSISDSQSTISDDDSEDYFSV 171
>AJ243182-1|CAB45863.1| 2857|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2857
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2224 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2277
>AJ243181-1|CAB45862.1| 2836|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2836
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2203 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2256
>AJ243180-1|CAB45861.1| 2892|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2892
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2259 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2312
>AJ243179-1|CAB45860.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2213 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2266
>AF168688-1|AAF05302.1| 2846|Caenorhabditis elegans inositol
1,4,5-trisphosphate receptorprotein.
Length = 2846
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2213 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2266
>AF036702-4|AAK68365.1| 2857|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform e protein.
Length = 2857
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2224 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2277
>AF036702-3|AAK68366.1| 2846|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform f protein.
Length = 2846
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2213 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2266
>AF036702-2|AAW30669.1| 2836|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform d protein.
Length = 2836
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2203 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2256
>AF036702-1|AAW30668.1| 2892|Caenorhabditis elegans Inositol
triphosphate receptorprotein 1, isoform a protein.
Length = 2892
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/56 (37%), Positives = 29/56 (51%)
Frame = +1
Query: 1 KKSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKI 168
+++ LK P++ V LPEI V S S+H +EKN +SS DK N I
Sbjct: 2259 RQAEDDLKKKSGPQITVNTVTLPEINVDASGIVSIH--TEKNISSSLDDKFNDDDI 2312
>Z79602-1|CAB01888.3| 508|Caenorhabditis elegans Hypothetical
protein K09E9.1 protein.
Length = 508
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 448 SVAFDKVLEMTEDDKWPILISESREDLIE-FSAFDFTLILL 329
SV+ DKV DDK P+ ++E R+ + E F ++ L++L
Sbjct: 13 SVSSDKVATEQRDDKGPLKLTEPRKRMREDFGYYEIRLLVL 53
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 64 LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNN 216
L ++ D L L+FK EK N+ + +++T ++ K+K + P +
Sbjct: 406 LQKLFADDELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRS 456
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 64 LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNN 216
L ++ D L L+FK EK N+ + +++T ++ K+K + P +
Sbjct: 375 LQKLFADDELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRS 425
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 64 LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNN 216
L ++ D L L+FK EK N+ + +++T ++ K+K + P +
Sbjct: 375 LQKLFADDELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRS 425
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 64 LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNN 216
L ++ D L L+FK EK N+ + +++T ++ K+K + P +
Sbjct: 375 LQKLFADDELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRS 425
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 64 LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNN 216
L ++ D L L+FK EK N+ + +++T ++ K+K + P +
Sbjct: 406 LQKLFADDELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRS 456
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 28.3 bits (60), Expect = 8.0
Identities = 13/51 (25%), Positives = 26/51 (50%)
Frame = +1
Query: 64 LPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNKWKVHLLPNN 216
L ++ D L L+FK EK N+ + +++T ++ K+K + P +
Sbjct: 375 LQKLFADDELGSVLNFKEEKLKNTDSNNDSDTTSVILQRSRKYKKNKRPRS 425
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,966,361
Number of Sequences: 27780
Number of extensions: 416212
Number of successful extensions: 1231
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 1159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1231
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2318293978
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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