Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0439.Seq
         (908 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   2.9  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   8.9  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   8.9  
AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family p...    22   8.9  

>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.4 bits (48), Expect = 2.9
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = -1

Query: 782 WCQTTRNAYIPLN 744
           WC  TR  YIP N
Sbjct: 458 WCWDTRKEYIPQN 470


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 75  YFWQINNWAADFRN 34
           YF++I+NW  D  +
Sbjct: 539 YFYEIDNWMLDLNS 552


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = -3

Query: 75  YFWQINNWAADFRN 34
           YF++I+NW  D  +
Sbjct: 539 YFYEIDNWMLDLNS 552


>AF134820-1|AAD40235.1|  166|Apis mellifera putative Ets-family
           protein protein.
          Length = 166

 Score = 21.8 bits (44), Expect = 8.9
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 92  RESCTFISGKSTIGPRTSGITKSFNLDID 6
           R  C  ++GK  +  R  G   S N+DI+
Sbjct: 25  RFPCLLLNGKXDLFARCMGGINSRNMDIE 53


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 243,836
Number of Sequences: 438
Number of extensions: 5859
Number of successful extensions: 20
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29509116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)