Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0439.Seq
(908 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44380.1 68418.m05434 FAD-binding domain-containing protein s... 35 0.065
At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transfera... 32 0.60
At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR... 31 0.80
At2g34780.1 68415.m04270 expressed protein 29 4.3
At1g69800.1 68414.m08031 CBS domain-containing protein low simil... 29 4.3
At5g32470.1 68418.m03828 expressed protein 28 7.4
At4g26810.1 68417.m03861 SWIB complex BAF60b domain-containing p... 28 7.4
At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing... 28 7.4
At4g27760.1 68417.m03988 oxidoreductase, forever young (FEY3) id... 28 9.8
At1g29750.2 68414.m03638 leucine-rich repeat transmembrane prote... 28 9.8
At1g29750.1 68414.m03637 leucine-rich repeat transmembrane prote... 28 9.8
>At5g44380.1 68418.m05434 FAD-binding domain-containing protein
similar to SP|P30986 reticuline oxidase precursor
(Berberine-bridge-forming enzyme) (BBE)
(Tetrahydroprotoberberine synthase) [Eschscholzia
californica]; contains PF01565 FAD binding domain
Length = 541
Score = 35.1 bits (77), Expect = 0.065
Identities = 16/62 (25%), Positives = 33/62 (53%)
Frame = +2
Query: 80 YKILLQNHYILNQKKIRTALNWIKQIVQRLCPLMTINGKFTFYQTTYRSIRQPSNENHSS 259
+KIL +++ N K +NWIK+I + P ++ N + + YR + N+N++
Sbjct: 439 FKILYYANWLENDKTSSRKINWIKEIYNYMAPYVSSNPRQAY--VNYRDLDFGQNKNNAK 496
Query: 260 IH 265
++
Sbjct: 497 VN 498
>At2g36780.1 68415.m04511 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 496
Score = 31.9 bits (69), Expect = 0.60
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 303 NFNERVEAFNKIN--VKSNALNSMRSSLDSDIRIGHLSSSVISRTLSNATDYMKKDYKEV 476
+F +RVE F K+ VK+NA + +D ++ + S VI T KDYKE
Sbjct: 185 SFPDRVE-FTKLQLPVKANASGDWKEIMDEMVKAEYTSYGVIVNTFQELEPPYVKDYKEA 243
Query: 477 IN 482
++
Sbjct: 244 MD 245
>At5g45060.1 68418.m05525 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1165
Score = 31.5 bits (68), Expect = 0.80
Identities = 17/41 (41%), Positives = 24/41 (58%)
Frame = +1
Query: 22 KDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKL 144
K + VRG +DL E+KV+ SL + HFK+ +N KL
Sbjct: 550 KTMGAANVRGIFLDLSEVKVETSLDRE-HFKNMRNLRYLKL 589
>At2g34780.1 68415.m04270 expressed protein
Length = 1297
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +1
Query: 4 KSMSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTK 165
K ++K K L++ + D+PE+K + SL K+L SE+ S+ K S K
Sbjct: 148 KELNKAKALIVKDEEIE-QDIPEVKREISLVKNL-LASERQKTESERKKAESEK 199
>At1g69800.1 68414.m08031 CBS domain-containing protein low
similarity to SP|Q9UGI9 5'-AMP-activated protein kinase,
gamma-3 subunit (AMPK gamma-3 chain) (AMPK gamma3) {Homo
sapiens}; contains Pfam profile PF00571: CBS domain
Length = 447
Score = 29.1 bits (62), Expect = 4.3
Identities = 18/69 (26%), Positives = 31/69 (44%)
Frame = +3
Query: 420 ISRTLSNATDYMKKDYKEVINYAREFKNVELKCVLLRTLWIAIMILP*ARLSQVIDPQLP 599
I + A D + KD+ EVI FK+ ++ +L W LP + S ++ L
Sbjct: 178 IGKDAPTAADKLGKDFYEVILQEEPFKSTTVRTILKSFRWAP--FLPVSTESSMLSVMLL 235
Query: 600 LQWHTIENI 626
L + + N+
Sbjct: 236 LSKYRLRNV 244
>At5g32470.1 68418.m03828 expressed protein
Length = 575
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/27 (40%), Positives = 20/27 (74%)
Frame = -2
Query: 400 PILISESREDLIEFSAFDFTLILLNAS 320
P+L + S++DL+ FS FD T ++++S
Sbjct: 302 PLLKNHSKDDLVIFSDFDLTCTVVDSS 328
>At4g26810.1 68417.m03861 SWIB complex BAF60b domain-containing
protein contains Pfam profile PF02201: BAF60b domain of
the SWIB complex
Length = 106
Score = 28.3 bits (60), Expect = 7.4
Identities = 18/43 (41%), Positives = 25/43 (58%)
Frame = +1
Query: 16 KLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKL 144
KLK +++ + R +VDLP SL K LHF E+ NS K+
Sbjct: 71 KLKSILLGKQRVELVDLP------SLIK-LHFPKEQKKNSQKI 106
>At4g11810.1 68417.m01880 SPX (SYG1/Pho81/XPR1) domain-containing
protein weak similarity to SP|P51564 Tetracycline
resistance protein, class H {Pasteurella multocida},
SP|P39843 Multidrug resistance protein 2
(Multidrug-efflux transporter 2) {Bacillus subtilis};
contains Pfam profile PF03105: SPX domain
Length = 707
Score = 28.3 bits (60), Expect = 7.4
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = -1
Query: 656 FGDKRAPSRFYILDCMPLERKLR 588
FG RA +R YI DC+PL+ +++
Sbjct: 355 FGSARAVNRRYISDCVPLKIRMQ 377
>At4g27760.1 68417.m03988 oxidoreductase, forever young (FEY3)
identical to forever young (FEY3) oxidoreductase from
GI:12004621 [Arabidopsis thaliana]
Length = 374
Score = 27.9 bits (59), Expect = 9.8
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +3
Query: 570 LSQVIDPQLPLQWHTIENIESGWCTFIPKN 659
L DPQ+P W T++N + C FI ++
Sbjct: 293 LFSATDPQIPEYWETLKNDDWPVCPFISQD 322
>At1g29750.2 68414.m03638 leucine-rich repeat transmembrane protein
kinase, putative / serine/threonine kinase, putative
(RKF1) similar to receptor-like serine/threonine kinase
GI:2465923 from [Arabidopsis thaliana]; identical to
cDNA receptor-like serine/threonine kinase (RKF1)
GI:2465922
Length = 1021
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +1
Query: 10 MSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNK 189
+S L +L I ++RGP+ P +K LTK + KN N S T + + L
Sbjct: 264 LSNLVNLRISDIRGPVQPFPSLKNVTGLTKII----LKNCNISGQIPTYLSHLKELETLD 319
Query: 190 WKVHLLPNNIPKYSPA 237
+ L IP + A
Sbjct: 320 LSFNKLVGGIPSLAQA 335
>At1g29750.1 68414.m03637 leucine-rich repeat transmembrane protein
kinase, putative / serine/threonine kinase, putative
(RKF1) similar to receptor-like serine/threonine kinase
GI:2465923 from [Arabidopsis thaliana]; identical to
cDNA receptor-like serine/threonine kinase (RKF1)
GI:2465922
Length = 1006
Score = 27.9 bits (59), Expect = 9.8
Identities = 22/76 (28%), Positives = 33/76 (43%)
Frame = +1
Query: 10 MSKLKDLVIPEVRGPIVDLPEIKVQDSLTKSLHFKSEKNSNSSKLDKTNSTKIVPLNDNK 189
+S L +L I ++RGP+ P +K LTK + KN N S T + + L
Sbjct: 249 LSNLVNLRISDIRGPVQPFPSLKNVTGLTKII----LKNCNISGQIPTYLSHLKELETLD 304
Query: 190 WKVHLLPNNIPKYSPA 237
+ L IP + A
Sbjct: 305 LSFNKLVGGIPSLAQA 320
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,679,171
Number of Sequences: 28952
Number of extensions: 378204
Number of successful extensions: 1007
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1006
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2149324008
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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