Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0438.Seq
         (512 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces p...    29   0.54 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    26   2.9  
SPBC2G5.06c |hmt2|cad1|sulfide-quinone oxidoreductase|Schizosacc...    25   5.0  
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac...    25   6.7  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   6.7  

>SPBC887.06c |snx3|grd19|sorting nexin Snx3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 143

 Score = 28.7 bits (61), Expect = 0.54
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
 Frame = -2

Query: 223 TTGRISCQTSLPFIYNHNRTPSRR-GEDISFFSFLNNETCRXXXXXXXXXXXLQRKRID 50
           TT  I C+T++P+   HN +  RR  E   F   L  E+ R            QR R D
Sbjct: 43  TTYEIVCRTNMPYFRLHNSSVRRRYSEFEKFHDMLERESGRVSIPPLPGKIFTQRFRDD 101


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 13/56 (23%), Positives = 23/56 (41%)
 Frame = +3

Query: 114 SLLRKEKNEISSPRRLGVRLWL*IKGSDV*QEMRPVVIAACLLLLAPSRIPGGRPV 281
           +L  K  ++   P+  G   W  +  + V   +     + C  L  P R PG +P+
Sbjct: 537 TLYTKPFHQRDGPKPTGASQWAAVACTSVVSCIIMAAASLCEYLFVPRRFPGSKPI 592


>SPBC2G5.06c |hmt2|cad1|sulfide-quinone
           oxidoreductase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 459

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -2

Query: 394 ALSDLLHQAGFIPADLS--QSTSCPTIF 317
           A SDL  ++GF+  D S  QST  P +F
Sbjct: 309 AKSDLADKSGFVAVDQSTTQSTKFPNVF 336


>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
           Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1373

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 10/22 (45%), Positives = 17/22 (77%)
 Frame = -3

Query: 66  KENESTIFKTLSKFRGVSRTRI 1
           K +ES++++TLS+FR  +R  I
Sbjct: 530 KNSESSLYETLSQFRTANRLLI 551


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 6.7
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -3

Query: 477 FLMLRLCVVQFQRRLLN*WAHSVAPKVTPLVISFTKPVSFLQI*ASLPR 331
           +L +  C + + R L N   HS+A  +  LV SF K V+ +     LPR
Sbjct: 250 YLSIMTCKL-YARFLNNAQMHSLANSLPGLVFSFRKVVTQILTSTRLPR 297


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,814,072
Number of Sequences: 5004
Number of extensions: 32925
Number of successful extensions: 61
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)