Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0438.Seq
(512 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0568 - 30034280-30034393,30034888-30035163,30035246-300353... 32 0.24
11_01_0700 + 5764149-5764979 29 1.7
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347... 29 1.7
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758... 29 2.9
04_04_1587 + 34630678-34632282 29 2.9
07_03_0765 - 21341872-21342198,21342482-21342635,21342716-213429... 28 5.1
01_06_1153 - 34942608-34942975,34943082-34943330,34943516-349436... 28 5.1
07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883 27 6.7
05_03_0157 - 9027777-9027862,9028142-9029357 27 8.8
02_05_0167 - 26415319-26415494,26415591-26415840,26415909-264159... 27 8.8
01_01_0612 + 4565422-4565481,4565597-4565671,4565760-4566332,456... 27 8.8
>02_05_0568 -
30034280-30034393,30034888-30035163,30035246-30035371,
30035595-30035753,30035893-30036063,30036374-30036493,
30036565-30036924,30038800-30039686,30039790-30040363,
30041379-30041507,30042423-30042494,30042572-30042728,
30042974-30043023,30043569-30044327
Length = 1317
Score = 32.3 bits (70), Expect = 0.24
Identities = 21/53 (39%), Positives = 26/53 (49%), Gaps = 2/53 (3%)
Frame = -2
Query: 478 FPHAPPLRSTVPAAASELMGAFGGSQGHA--LSDLLHQAGFIPADLSQSTSCP 326
FP P + +P+AA+ A G SQ H L LL +G PA L S S P
Sbjct: 86 FPMPTPNPAAIPSAAAAAAAAAGPSQNHGARLMQLLGSSG--PAHLDSSASMP 136
>11_01_0700 + 5764149-5764979
Length = 276
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +3
Query: 327 GHEVDWLRSAGMKPAW*RR-SLRA*PWEPPNAPIS 428
G+ + WL+ G A RR ++RA PW P + P+S
Sbjct: 224 GNHLPWLQPRGPLVAHRRRDAVRAPPWRPTHTPLS 258
>04_04_1094 -
30832987-30833316,30833530-30834273,30834484-30834742,
30834821-30835041,30835127-30835375,30835460-30835595,
30835864-30836207,30836589-30836758,30837080-30837185,
30837267-30837330,30838462-30838616
Length = 925
Score = 29.5 bits (63), Expect = 1.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -2
Query: 286 SATGRPPGIREGARSSRQAAITTGRISCQTSLPFIYNHNRT 164
S T P + R ++ I +G S Q +L F+Y+HNR+
Sbjct: 241 SHTVDPNEVARADRLAKIKGILSGETSIQLTLQFLYSHNRS 281
>08_01_0783 +
7585326-7585477,7586420-7586589,7586687-7586801,
7586887-7587055,7587185-7587319,7587409-7587728,
7587992-7588127,7588224-7588472,7588567-7588787,
7588906-7589164,7589264-7589971,7590095-7590424
Length = 987
Score = 28.7 bits (61), Expect = 2.9
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -2
Query: 271 PPGIREGARSSRQAAITTGRISCQTSLPFIYNHNRT 164
P + R ++ I +G S Q +L F+Y+HNR+
Sbjct: 320 PNEVAHADRLTKIKGILSGETSIQLTLQFLYSHNRS 355
>04_04_1587 + 34630678-34632282
Length = 534
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = -2
Query: 475 PHAPPLRSTVPAAASELMGAFGGSQGHALSDLLHQAGFIPADLSQSTSCPTIFL 314
P PP RS + A S +G + + D+ G IPA LS+ + ++L
Sbjct: 107 PLPPPRRSYMEGALSASLGGLEFLETLVIRDMARIGGAIPASLSRLSRLKQLYL 160
>07_03_0765 -
21341872-21342198,21342482-21342635,21342716-21342953,
21343072-21343282,21343475-21343611,21347267-21348179
Length = 659
Score = 27.9 bits (59), Expect = 5.1
Identities = 16/60 (26%), Positives = 24/60 (40%)
Frame = -2
Query: 460 LRSTVPAAASELMGAFGGSQGHALSDLLHQAGFIPADLSQSTSCPTIFLAHHARIQDHSA 281
L +++PA AS F A D ++ D + ++SC T A Q H A
Sbjct: 81 LATSLPAYASSSPSLFASGSSGAPPDAIYALALCRGDTTNASSCATCVAAAIQAAQKHCA 140
>01_06_1153 -
34942608-34942975,34943082-34943330,34943516-34943625,
34944698-34944771,34945237-34945306,34945848-34945947,
34946045-34946120,34946572-34946646,34947067-34947156,
34947238-34947354,34947457-34947567,34947649-34947788,
34947962-34948043,34948224-34948303,34948938-34949046,
34949295-34949417,34949972-34950044,34950338-34950489,
34951029-34951127,34952258-34952383
Length = 807
Score = 27.9 bits (59), Expect = 5.1
Identities = 18/52 (34%), Positives = 24/52 (46%)
Frame = -2
Query: 475 PHAPPLRSTVPAAASELMGAFGGSQGHALSDLLHQAGFIPADLSQSTSCPTI 320
P L+ +P AS L FG + AL LL ++PAD + PTI
Sbjct: 321 PREIVLKKLLPVLASAL--EFGSAAAPALVVLLKMGSWLPADQFSAKVLPTI 370
>07_03_0553 - 19390886-19391452,19391596-19391709,19391827-19391883
Length = 245
Score = 27.5 bits (58), Expect = 6.7
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = -2
Query: 367 GFIPADLSQSTSCPTIFLAHHARIQDHSATGRPPGIREGARSSRQAA 227
G++ AD++ TS P I H A Q S + PP + RS + A
Sbjct: 79 GYVEADINPGTSSPAI---HIATTQLESPSSGPPAAQPQTRSLERYA 122
>05_03_0157 - 9027777-9027862,9028142-9029357
Length = 433
Score = 27.1 bits (57), Expect = 8.8
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = -2
Query: 475 PHAPPLRSTVPAAASELMGAFGGSQGHALSDLLHQAG 365
PH PP R V + +G GG + A+ L Q G
Sbjct: 169 PHGPPDRYAVALFREDSVGYRGGDERFAMRRFLSQTG 205
>02_05_0167 -
26415319-26415494,26415591-26415840,26415909-26415974,
26416457-26416600,26416813-26416868,26416966-26417101,
26417190-26417277,26417379-26417482,26418515-26419180,
26419337-26419432,26419974-26420242,26420334-26420489,
26421153-26421192
Length = 748
Score = 27.1 bits (57), Expect = 8.8
Identities = 14/47 (29%), Positives = 22/47 (46%)
Frame = -2
Query: 295 QDHSATGRPPGIREGARSSRQAAITTGRISCQTSLPFIYNHNRTPSR 155
+ H A P E ++ + AA TG ++ Q PF +H + P R
Sbjct: 665 RSHMAGKGPTDHHEASKRTHSAAFGTGGMNRQGRGPFAASHPKGPQR 711
>01_01_0612 +
4565422-4565481,4565597-4565671,4565760-4566332,
4566438-4566551,4566676-4567377
Length = 507
Score = 27.1 bits (57), Expect = 8.8
Identities = 26/87 (29%), Positives = 35/87 (40%), Gaps = 16/87 (18%)
Frame = -2
Query: 490 SH*YFPHAPPLRSTVPAAASELMGAFGGSQGHALSDLLHQAGFI-------------PAD 350
SH P A + ST AAA+ L S H + H F P
Sbjct: 294 SHPLPPAAAAMASTTSAAAAMLTSGSTNSTMHGSGGVHHHLPFASAVGGGGGVGLLGPTT 353
Query: 349 LSQSTSCPTIFL---AHHARIQDHSAT 278
+S +TSCPT+ L A H+ + SA+
Sbjct: 354 ISTATSCPTVTLDLTAPHSLLHPSSAS 380
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,600,425
Number of Sequences: 37544
Number of extensions: 254187
Number of successful extensions: 725
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1106928780
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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