Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0438.Seq
         (512 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_31733| Best HMM Match : No HMM Matches (HMM E-Value=.)              64   6e-11
SB_1139| Best HMM Match : wnt (HMM E-Value=0)                          55   4e-08
SB_46626| Best HMM Match : wnt (HMM E-Value=0)                         52   4e-07
SB_531| Best HMM Match : wnt (HMM E-Value=0)                           46   2e-05
SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)              43   1e-04
SB_40347| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.002
SB_10627| Best HMM Match : No HMM Matches (HMM E-Value=.)              37   0.011
SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)                   31   0.74 
SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.2  
SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)          29   3.0  
SB_19403| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_178| Best HMM Match : DUF201 (HMM E-Value=3.3)                      28   5.2  
SB_51487| Best HMM Match : wnt (HMM E-Value=1.1e-08)                   28   5.2  
SB_18827| Best HMM Match : wnt (HMM E-Value=1.6e-09)                   28   5.2  
SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.9  
SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)                     27   9.1  

>SB_31733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 726

 Score = 64.1 bits (149), Expect = 6e-11
 Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
 Frame = +2

Query: 266 WWASGS--AVILDPR---MVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQF 430
           WW  G+  +V  DP    M+C   R+   R  ++CR    L++ +  G   G  EC HQF
Sbjct: 304 WWTLGTQLSVSSDPAKKSMLCYVTRQFNSRQQEVCRKNPDLMEHVAHGAKYGVHECRHQF 363

Query: 431 RSRRWNCTTQRRS---MRKILMRDTRE 502
           R+RRWNC+T R S      +L +  RE
Sbjct: 364 RNRRWNCSTIRESGSLFESVLSKGCRE 390


>SB_1139| Best HMM Match : wnt (HMM E-Value=0)
          Length = 500

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 30/87 (34%), Positives = 44/87 (50%), Gaps = 7/87 (8%)
 Frame = +2

Query: 266 WWASGS-AVILDP---RMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQFR 433
           WW S + AV+  P   +++C           Q+C +   ++  I KG  LG  EC HQFR
Sbjct: 162 WWISQNRAVLFGPAGAKVMCNSITGLISIQRQMCLDNPDVMVSIGKGAKLGVEECQHQFR 221

Query: 434 SRRWNCTT---QRRSMRKILMRDTRET 505
            +RWNC+T         K++ R +RET
Sbjct: 222 DQRWNCSTVNGDATVFGKVMRRASRET 248


>SB_46626| Best HMM Match : wnt (HMM E-Value=0)
          Length = 359

 Score = 51.6 bits (118), Expect = 4e-07
 Identities = 18/57 (31%), Positives = 35/57 (61%)
 Frame = +2

Query: 284 AVILDPRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQFRSRRWNCT 454
           +V + P ++C + +    +  + C ++ G +  I++G  LG  EC +QFR++RWNC+
Sbjct: 72  SVAIPPSIICTRIQPLSAKQMRFCEDKPGTMVSISQGYDLGVEECKYQFRNKRWNCS 128


>SB_531| Best HMM Match : wnt (HMM E-Value=0)
          Length = 646

 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 6/71 (8%)
 Frame = +2

Query: 263 SWWASGSAVILDP-RMVCKKNRRTRGRL-----AQICRNETGLVKEITKGVTLGATECAH 424
           S W S +    +P R + KKN    G+L      Q+C+    ++  +  G ++   EC H
Sbjct: 258 SQWLSLALTGSNPNRFLSKKNCDEIGQLLNHRQVQVCKRNIQVMDSVKDGASVALFECQH 317

Query: 425 QFRSRRWNCTT 457
           QFR R WNCTT
Sbjct: 318 QFRYRPWNCTT 328


>SB_42974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 477

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 22/55 (40%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
 Frame = +2

Query: 347 QICRNETGLVKEITKGVTLGATECAHQFRSRRWNCT--TQRRSMRKILMRDTRET 505
           +I R    L++ I  G      EC HQFR+R+WNC+  +      KIL R  RET
Sbjct: 59  RISRRYPELIQYIAGGARTAIHECQHQFRNRKWNCSAHSPENVFGKILKRACRET 113


>SB_40347| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 398

 Score = 39.1 bits (87), Expect = 0.002
 Identities = 12/37 (32%), Positives = 23/37 (62%)
 Frame = +2

Query: 347 QICRNETGLVKEITKGVTLGATECAHQFRSRRWNCTT 457
           ++C  +  ++  +++G  +G  EC  QF+  RWNC+T
Sbjct: 12  RMCLQKPDVIPSVSQGANIGIHECKKQFKYERWNCST 48


>SB_10627| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 448

 Score = 36.7 bits (81), Expect = 0.011
 Identities = 12/25 (48%), Positives = 18/25 (72%)
 Frame = +2

Query: 383 ITKGVTLGATECAHQFRSRRWNCTT 457
           +T  V +   EC HQF+++RWNC+T
Sbjct: 4   VTAAVEMTREECQHQFQNKRWNCST 28


>SB_20038| Best HMM Match : wnt (HMM E-Value=3.8e-05)
          Length = 155

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +2

Query: 371 LVKEITKGVTLGATECAHQFRSRRWNCTTQRRSMRKI 481
           L+  +  G  L   EC  QF++ +WNC+ +  S  ++
Sbjct: 31  LITIVQSGDELSLKECKSQFQNEKWNCSVRFASSNRM 67


>SB_13949| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 1/66 (1%)
 Frame = -2

Query: 328 PTIFLAHHARIQDHSATG-RPPGIREGARSSRQAAITTGRISCQTSLPFIYNHNRTPSRR 152
           P   L +  R++D  A   R  GI E  R+  +    T  + C     F+ NH R  S R
Sbjct: 547 PYTQLKYQGRMRDEFADLLRELGIYEDLRTRTELGDKTSPVDCMEKTMFLINHTRKESTR 606

Query: 151 GEDISF 134
               S+
Sbjct: 607 KTSHSY 612


>SB_52133| Best HMM Match : Glutaredoxin (HMM E-Value=4.4e-17)
          Length = 374

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 359 NETGLVKEITKGVTLGATECAHQFRSRRWNCTTQRRSMRKILMRDTRE 502
           NETG +KE+  G       CA     R  NC++   S R   MR +RE
Sbjct: 299 NETGELKELLSGFKKQRDVCARCGGFRFINCSSCNGSKRTRRMRISRE 346


>SB_19403| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = -2

Query: 316 LAHHARIQDHSATGRPPGIREGARSSRQAAITTGRISCQTSLPFIYNHNRTP 161
           +AHHA   D S  G    +REG  ++R  AIT GR    T++  +  HN  P
Sbjct: 26  IAHHA--VDASTVG---AVREGLGTARAHAITAGR--GNTAINLLITHNVFP 70


>SB_178| Best HMM Match : DUF201 (HMM E-Value=3.3)
          Length = 847

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 241 SRQAAITTGRISCQTSLPFIYNHNRTPSR 155
           +R AA+   R+ C T  PF+ N  R P+R
Sbjct: 10  NRAAALHNIRVLCPTLAPFVINTYRLPAR 38


>SB_51487| Best HMM Match : wnt (HMM E-Value=1.1e-08)
          Length = 186

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 ECAHQFRSRRWNCTTQRRSMRKILMRD 493
           EC  QF++ +WNC++     R I MRD
Sbjct: 29  ECRQQFKASKWNCSSV--WARPIKMRD 53


>SB_18827| Best HMM Match : wnt (HMM E-Value=1.6e-09)
          Length = 147

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 413 ECAHQFRSRRWNCTTQRRSMRKILMRD 493
           EC  QF++ +WNC++     R I MRD
Sbjct: 29  ECRQQFKASKWNCSSV--WARPIKMRD 53


>SB_43320| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 259

 Score = 27.5 bits (58), Expect = 6.9
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 359 NETGLVKEITKGVTLGATECAHQFRSRRWNCTTQRRSMRKILMRDTRE 502
           NE G      +GVT   T   HQ  ++R + +TQR  + K   R   +
Sbjct: 33  NERGSPSTHREGVTRYTTRGGHQVHNQRGSPSTQREGVTKYTPRGVHQ 80



 Score = 27.1 bits (57), Expect = 9.1
 Identities = 15/44 (34%), Positives = 20/44 (45%)
 Frame = +2

Query: 359 NETGLVKEITKGVTLGATECAHQFRSRRWNCTTQRRSMRKILMR 490
           NE G      +GVT   T   HQ  + R + +TQR  + K   R
Sbjct: 175 NERGSPSTQREGVTKYTTRGGHQVHNERGSPSTQREGVTKYTSR 218


>SB_45581| Best HMM Match : Ras (HMM E-Value=0.069)
          Length = 284

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = -2

Query: 421 GAFGGSQGHALSDLLHQAGFIPADLS-QSTSCPTIFLAHHARIQDHSATGRPPGI-REGA 248
           G F GS+ H  S +L       AD+S  +   P + + +HA+ Q    T +   +  E A
Sbjct: 122 GVFDGSEVHEASSILVHLSRAGADVSIYAPDIPQMHVINHAKGQPSEETRQVRNVLHESA 181

Query: 247 RSSR 236
           R +R
Sbjct: 182 RIAR 185


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,178,404
Number of Sequences: 59808
Number of extensions: 277370
Number of successful extensions: 686
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 651
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1136110413
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)