Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0438.Seq
         (512 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72942-1|CAA51447.1|  335|Caenorhabditis elegans Wnt-1 protein.        42   3e-04
X72941-1|CAA51446.1|  372|Caenorhabditis elegans Wnt-1 protein p...    42   3e-04
AF025463-6|AAO38623.1|  332|Caenorhabditis elegans C. elegans wn...    42   3e-04
AF025463-5|AAB71011.1|  372|Caenorhabditis elegans C. elegans wn...    42   3e-04
Z68301-1|CAA92624.1|  360|Caenorhabditis elegans Hypothetical pr...    34   0.069
U41996-3|AAA83472.2|  362|Caenorhabditis elegans More of ms prot...    33   0.091
AF013952-1|AAC47749.1|  362|Caenorhabditis elegans mom-2 protein.      33   0.091
X72943-1|CAA51448.1|  360|Caenorhabditis elegans Wnt-2 protein p...    33   0.16 
Z70271-1|CAB61041.1|  393|Caenorhabditis elegans Hypothetical pr...    31   0.48 
AF103732-1|AAD03603.1|  393|Caenorhabditis elegans Wnt homolog p...    31   0.48 
AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans trithorax-rel...    30   1.1  
AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell...    30   1.1  
U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein pro...    29   1.5  
U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein pro...    29   1.5  
AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell...    29   1.5  
Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical pr...    28   4.5  
Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical pr...    28   4.5  
L15313-10|AAP68920.1|  355|Caenorhabditis elegans Hypothetical p...    28   4.5  
L15313-9|AAP68921.1|  357|Caenorhabditis elegans Hypothetical pr...    28   4.5  
U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical pr...    27   6.0  

>X72942-1|CAA51447.1|  335|Caenorhabditis elegans Wnt-1 protein.
          Length = 335

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 299 PRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQFRSRRWNCT 454
           P   CK  +    R  + C+    L++ +  G      EC  QF  RRWNCT
Sbjct: 38  PGTSCKSLKGLTRRQMRFCKKNIDLMESVRSGSLAAHAECQFQFHKRRWNCT 89


>X72941-1|CAA51446.1|  372|Caenorhabditis elegans Wnt-1 protein
           protein.
          Length = 372

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 299 PRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQFRSRRWNCT 454
           P   CK  +    R  + C+    L++ +  G      EC  QF  RRWNCT
Sbjct: 38  PGTSCKSLKGLTRRQMRFCKKNIDLMESVRSGSLAAHAECQFQFHKRRWNCT 89


>AF025463-6|AAO38623.1|  332|Caenorhabditis elegans C. elegans wnt
           family protein 1,isoform b protein.
          Length = 332

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 299 PRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQFRSRRWNCT 454
           P   CK  +    R  + C+    L++ +  G      EC  QF  RRWNCT
Sbjct: 38  PGTSCKSLKGLTRRQMRFCKKNIDLMESVRSGSLAAHAECQFQFHKRRWNCT 89


>AF025463-5|AAB71011.1|  372|Caenorhabditis elegans C. elegans wnt
           family protein 1,isoform a protein.
          Length = 372

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 17/52 (32%), Positives = 23/52 (44%)
 Frame = +2

Query: 299 PRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQFRSRRWNCT 454
           P   CK  +    R  + C+    L++ +  G      EC  QF  RRWNCT
Sbjct: 38  PGTSCKSLKGLTRRQMRFCKKNIDLMESVRSGSLAAHAECQFQFHKRRWNCT 89


>Z68301-1|CAA92624.1|  360|Caenorhabditis elegans Hypothetical
           protein W01B6.1 protein.
          Length = 360

 Score = 33.9 bits (74), Expect = 0.069
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 263 SWWASGSAVIL-----DPRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQ 427
           SWW++ + +       + + VC+    + G+ AQ+C      +  ++ G      EC  Q
Sbjct: 25  SWWSTVAQLSTALAGHNVKPVCELPGLSPGQ-AQVCELFKDHMPAVSIGAQNAIQECQRQ 83

Query: 428 FRSRRWNCTT 457
           F   RWNC+T
Sbjct: 84  FTGHRWNCST 93


>U41996-3|AAA83472.2|  362|Caenorhabditis elegans More of ms protein
           2 protein.
          Length = 362

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +2

Query: 260 DSWWA-----SGSAVILDPRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAH 424
           D+WW      + SA      ++CK       +  ++C     ++K +  G+      C +
Sbjct: 23  DAWWLLSKTDTSSANSGSSPILCKNVPGLTPQQKRMCHENPNIIKYLISGLRSALHTCEY 82

Query: 425 QFRSRRWNCT 454
            F+   WNCT
Sbjct: 83  TFQREAWNCT 92


>AF013952-1|AAC47749.1|  362|Caenorhabditis elegans mom-2 protein.
          Length = 362

 Score = 33.5 bits (73), Expect = 0.091
 Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 5/70 (7%)
 Frame = +2

Query: 260 DSWWA-----SGSAVILDPRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAH 424
           D+WW      + SA      ++CK       +  ++C     ++K +  G+      C +
Sbjct: 23  DAWWLLSKTDTSSANSGSSPILCKNVPGLTPQQKRMCHENPNIIKYLISGLRSALHTCEY 82

Query: 425 QFRSRRWNCT 454
            F+   WNCT
Sbjct: 83  TFQREAWNCT 92


>X72943-1|CAA51448.1|  360|Caenorhabditis elegans Wnt-2 protein
           protein.
          Length = 360

 Score = 32.7 bits (71), Expect = 0.16
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)
 Frame = +2

Query: 263 SWWASGSAVIL-----DPRMVCKKNRRTRGRLAQICRNETGLVKEITKGVTLGATECAHQ 427
           SWW++ + +       + + VC+    + G+ AQ+C      +  ++ G      EC  Q
Sbjct: 25  SWWSTVAQLSTALAGHNVKPVCELPGLSPGQ-AQVCELFKDHMPAVSIGRQNAIQECQRQ 83

Query: 428 FRSRRWNCTT 457
           F   RWNC+T
Sbjct: 84  FTGHRWNCST 93


>Z70271-1|CAB61041.1|  393|Caenorhabditis elegans Hypothetical
           protein W08D2.1 protein.
          Length = 393

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 350 ICRNETGLVKEITKGVTLGATECAHQFRSRRWNCTTQ 460
           +C      +  + +GV     EC ++F+  RWNC+++
Sbjct: 77  LCAENPFSIPFVARGVREAIRECENKFKFERWNCSSR 113


>AF103732-1|AAD03603.1|  393|Caenorhabditis elegans Wnt homolog
           protein.
          Length = 393

 Score = 31.1 bits (67), Expect = 0.48
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +2

Query: 350 ICRNETGLVKEITKGVTLGATECAHQFRSRRWNCTTQ 460
           +C      +  + +GV     EC ++F+  RWNC+++
Sbjct: 77  LCAENPFSIPFVARGVREAIRECENKFKFERWNCSSR 113


>AF163019-1|AAD49324.1| 1312|Caenorhabditis elegans
           trithorax-related protein LIN-59 protein.
          Length = 1312

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 404 GATECAHQFRSRRWNCTTQRRSM--RKILMRDTRET 505
           GATEC    R  RW C      +  R+ ++R+ R+T
Sbjct: 762 GATECKRVIRGVRWRCADPNEKIVTRRFVIRNRRKT 797


>AF039718-1|AAB96746.1| 1312|Caenorhabditis elegans Abnormal cell
           lineage protein 59 protein.
          Length = 1312

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +2

Query: 404 GATECAHQFRSRRWNCTTQRRSM--RKILMRDTRET 505
           GATEC    R  RW C      +  R+ ++R+ R+T
Sbjct: 762 GATECKRVIRGVRWRCADPNEKIVTRRFVIRNRRKT 797


>U22184-1|AAA64847.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 353 CRNETGLVKEITKGVTLGATECAHQFRSRRWNCT 454
           CR     V    +GV  G   CA++ R ++W+C+
Sbjct: 70  CRTHPATVISAFEGVQEGLQNCANRLRFQQWDCS 103


>U22179-1|AAA64846.1|  348|Caenorhabditis elegans Wnt protein
           protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 353 CRNETGLVKEITKGVTLGATECAHQFRSRRWNCT 454
           CR     V    +GV  G   CA++ R ++W+C+
Sbjct: 70  CRTHPATVISAFEGVQEGLQNCANRLRFQQWDCS 103


>AC006627-1|AAK85460.1|  348|Caenorhabditis elegans Abnormal cell
           lineage protein 44,isoform a protein.
          Length = 348

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +2

Query: 353 CRNETGLVKEITKGVTLGATECAHQFRSRRWNCT 454
           CR     V    +GV  G   CA++ R ++W+C+
Sbjct: 70  CRTHPATVISAFEGVQEGLQNCANRLRFQQWDCS 103


>Z82079-1|CAB04949.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 501 SLVSLINIFLMLRLCVVQFQRRLLN*WAHSVAPKVTPLV 385
           S +S + +FL  RLC++    R LN WA  +AP + PL+
Sbjct: 873 SRLSAVEVFL--RLCMMD--TRYLNGWATLLAPVIFPLL 907


>Z80344-7|CAB02491.1| 1529|Caenorhabditis elegans Hypothetical
           protein F15D4.1 protein.
          Length = 1529

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 16/39 (41%), Positives = 24/39 (61%)
 Frame = -3

Query: 501 SLVSLINIFLMLRLCVVQFQRRLLN*WAHSVAPKVTPLV 385
           S +S + +FL  RLC++    R LN WA  +AP + PL+
Sbjct: 873 SRLSAVEVFL--RLCMMD--TRYLNGWATLLAPVIFPLL 907


>L15313-10|AAP68920.1|  355|Caenorhabditis elegans Hypothetical
           protein ZK353.1a protein.
          Length = 355

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 376 HQAGFIPADLSQSTSCPTIFLAHHARIQDH 287
           H  G +P  L +S+SC TI++      Q H
Sbjct: 103 HHPGILPRSLRKSSSCSTIYIDDSTVSQPH 132


>L15313-9|AAP68921.1|  357|Caenorhabditis elegans Hypothetical
           protein ZK353.1b protein.
          Length = 357

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 376 HQAGFIPADLSQSTSCPTIFLAHHARIQDH 287
           H  G +P  L +S+SC TI++      Q H
Sbjct: 105 HHPGILPRSLRKSSSCSTIYIDDSTVSQPH 134


>U97592-5|AAB52873.1|  597|Caenorhabditis elegans Hypothetical
           protein C14A11.6 protein.
          Length = 597

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 322 IFLAHHARIQDHSATG-RPPGIREGARSSRQAAITTGRISCQTSLPFIYNHNRTPSR 155
           IF+A     Q  +ATG R  G R+ +R S  +  T   I+  TS P     N TPSR
Sbjct: 502 IFVAFSKWYQVCAATGNRVAGCRK-SRLSHSSTRTADTIAASTSTPPSTTSNITPSR 557


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,250,883
Number of Sequences: 27780
Number of extensions: 193029
Number of successful extensions: 430
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 426
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 430
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 985905834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)