Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0438.Seq
         (512 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51010.1 68416.m05585 expressed protein                             29   1.4  
At1g78130.1 68414.m09105 transporter-related low similarity to s...    29   1.8  
At5g32620.1 68418.m03883 hypothetical protein contains similarit...    28   3.2  
At3g19780.1 68416.m02504 expressed protein                             27   7.4  
At1g04810.1 68414.m00477 26S proteasome regulatory subunit, puta...    27   7.4  
At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger) fa...    27   9.8  
At1g64530.1 68414.m07315 RWP-RK domain-containing protein simila...    27   9.8  

>At3g51010.1 68416.m05585 expressed protein
          Length = 188

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -2

Query: 463 PLRSTVPAAASELMGAFGGSQGH 395
           P  +T+PAA  EL   FGGS  H
Sbjct: 29  PFNATIPAAKPELCSFFGGSMTH 51


>At1g78130.1 68414.m09105 transporter-related low similarity to
           spinster type III [Drosophila melanogaster] GI:12003974;
           contains Pfam profile: PF00083 major facilitator
           superfamily protein
          Length = 490

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = -2

Query: 439 AASELMGAFGGSQGHALSDLLHQAG-FIPADLSQSTSCP 326
           AAS L G FGG  G  LS  L  +G  I A +S +++ P
Sbjct: 271 AASSLGGLFGGKMGDFLSTRLPNSGRIILAQISSASAIP 309


>At5g32620.1 68418.m03883 hypothetical protein contains similarity
           to hypothetical proteins
          Length = 301

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = -2

Query: 313 AHHARIQDHSATGRPPGIREGARSSRQAAI 224
           +H   ++D S   RPPG++      R++AI
Sbjct: 201 SHPIHVEDDSIMSRPPGVKAAKAKGRKSAI 230


>At3g19780.1 68416.m02504 expressed protein
          Length = 1014

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 23/92 (25%), Positives = 38/92 (41%), Gaps = 5/92 (5%)
 Frame = -2

Query: 412  GGSQGHALSDLLHQAGFIPADLSQSTSCPTIFLAHHARIQDHSATGRPPGIREGARSSRQ 233
            GGS+ +  S+L  +    P +   S +  T FLA HA          P   R G R+S +
Sbjct: 742  GGSRNNQRSELAERNKVTPYEGESSVTDITEFLARHANNSREFFRLLPTLSRNGRRNSNK 801

Query: 232  -----AAITTGRISCQTSLPFIYNHNRTPSRR 152
                 ++    +++    L  +   NR P+ R
Sbjct: 802  VDQSSSSAVNNKVTDGDKLVEVVLRNREPAER 833


>At1g04810.1 68414.m00477 26S proteasome regulatory subunit,
           putative contains similarity to 26S proteasome
           regulatory subunit S1 SP:O88761, GI:3288594 from [Rattus
           norvegicus]
          Length = 1001

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = -2

Query: 247 RSSRQAAITTGRISCQTSLPFIYNHNRT 164
           R ++   I +G  S Q +L F+Y+HN++
Sbjct: 328 RLTKAKGILSGETSIQLTLQFLYSHNKS 355


>At5g42940.1 68418.m05235 zinc finger (C3HC4-type RING finger)
           family protein similar to Pfam domain, PF00097: Zinc
           finger, C3HC4 type (RING finger)
          Length = 691

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 377 KEITKGVTLGATECAHQFRSR 439
           +E T+G  +G  EC H+F S+
Sbjct: 642 EEYTEGEDMGTLECGHEFHSQ 662


>At1g64530.1 68414.m07315 RWP-RK domain-containing protein similar
           to nodule inception protein [Lotus japonicus]
           GI:6448579; contains Pfam profile: PF02042 RWP-RK domain
          Length = 841

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 19/69 (27%), Positives = 32/69 (46%)
 Frame = -2

Query: 358 PADLSQSTSCPTIFLAHHARIQDHSATGRPPGIREGARSSRQAAITTGRISCQTSLPFIY 179
           P D+  + +CP    +  + +QD     R      G+ +SR A+     I C+T    + 
Sbjct: 641 PIDIQLAKNCPPTSTSPLSNLQDVKIENRDAEDSAGSSTSR-ASCKVNPI-CETRFR-LP 697

Query: 178 NHNRTPSRR 152
            HN+ PSR+
Sbjct: 698 THNQEPSRQ 706


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,770,492
Number of Sequences: 28952
Number of extensions: 184516
Number of successful extensions: 440
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 437
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 440
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)