Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0437.Seq
         (901 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    23   3.3  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          23   3.3  
S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   4.3  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    23   4.3  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    23   4.3  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    23   4.3  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    23   4.3  
AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.    21   9.9  
AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    21   9.9  

>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 370 TPRPSLLAARTQSPRATRANRSRSPQA 450
           TP+ S   A + SP++T +N S SP+A
Sbjct: 150 TPKTSPNEA-SMSPQSTSSNNSASPKA 175


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 370 TPRPSLLAARTQSPRATRANRSRSPQA 450
           TP+ S   A + SP++T +N S SP+A
Sbjct: 170 TPKTSPNEA-SMSPQSTSSNNSASPKA 195


>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/33 (27%), Positives = 17/33 (51%)
 Frame = +1

Query: 127 VSFTEMEPEERVDPMARVFPKVTKCTFHKYGPS 225
           V  ++ EPE++ +    ++P    CT +   PS
Sbjct: 172 VDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPS 204


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 513 FIISGSMFFPSWYKTNQ 463
           F   GSM FP+ Y+ NQ
Sbjct: 276 FASRGSMHFPNQYQMNQ 292


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +2

Query: 221 HPVRAEIRRLVFLPLNIVNEKIYVFLWFWFM 313
           H   A  + +  +P   +N  IY+   FWFM
Sbjct: 204 HITMAHFKIIQVVPYCYINCLIYLIGGFWFM 234


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 513 FIISGSMFFPSWYKTNQ 463
           F   GSM FP+ Y+ NQ
Sbjct: 224 FASRGSMHFPNQYQMNQ 240


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 513 FIISGSMFFPSWYKTNQ 463
           F   GSM FP+ Y+ NQ
Sbjct: 407 FASRGSMHFPNQYQMNQ 423


>AY584475-1|AAS93634.1|  209|Tribolium castaneum homothorax protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 131 ASQKWSPRNAWTRWPE 178
           A  KW PR  W+  P+
Sbjct: 115 AMGKWCPRREWSSPPD 130


>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/16 (43%), Positives = 9/16 (56%)
 Frame = +2

Query: 131 ASQKWSPRNAWTRWPE 178
           A  KW PR  W+  P+
Sbjct: 271 AMGKWCPRREWSSPPD 286


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,609
Number of Sequences: 336
Number of extensions: 3796
Number of successful extensions: 11
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25030786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)