Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0437.Seq
         (901 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa...    29   0.68 
SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein Msa1|Schizosa...    28   1.6  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    27   3.6  
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc...    26   6.3  
SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|...    26   6.3  
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    26   8.4  
SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4 |Schizosa...    26   8.4  

>SPAC2G11.13 |atg22||autophagy associated protein Atg22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 29.5 bits (63), Expect = 0.68
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 495 MFFPSWYKTNQSPICSLRATASICSC 418
           +F P  YKTN +PI  L  T ++CSC
Sbjct: 256 IFTPILYKTNNNPII-LPITVTVCSC 280


>SPAC13G7.13c |msa1|SPAC6C3.01c|RNA-binding protein
           Msa1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 533

 Score = 28.3 bits (60), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
 Frame = +2

Query: 59  SALKYSSWTSFWTEN--FQLMAVTWSASQKWSPRNAWTR 169
           +ALK+S+W   W EN  +Q        S  +SP NA +R
Sbjct: 215 TALKHSAWPVLWAENVTYQNGHYKKKGSSPFSPPNAHSR 253


>SPCC1739.11c |cdc11||SIN component scaffold protein
           Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = -1

Query: 694 LAASPGSALRTQVKRPRRGPDLRSLTRHTDDPNLTVL 584
           L +SP S L+T   + RR    +S  + +D PN+ V+
Sbjct: 390 LNSSPKSTLKTSSVKTRRSHSAQSSRKVSDYPNMVVI 426


>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 898

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 17/57 (29%), Positives = 29/57 (50%)
 Frame = +1

Query: 28  LYVKFSTLST*CAQIFFMDFFLDGEFSTYGSDVVSFTEMEPEERVDPMARVFPKVTK 198
           L +KF    T  A I+  D F   +++T   +VV  +E+   +  D   +V+PK+ K
Sbjct: 695 LLLKFLYEETSIAYIYTYDEFYKDDYATSLPNVVYTSEVLLSKHNDSAFKVWPKLRK 751


>SPBC56F2.05c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 397

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 425 ALVARGDCVRAASRDGRGVQRQRPCG 348
           A ++R  C R   +  +G  RQRPCG
Sbjct: 335 AAISRSRCSRC-KKSKKGCDRQRPCG 359


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 577 YTGVTILCRFLQTSPLARSSVLYNQWIN 494
           + GV+    FL T+  A SSVL + W N
Sbjct: 378 HIGVSYFACFLMTAGAAASSVLTSTWYN 405


>SPAC167.01 |ppk4||serine/threonine protein kinase Ppk4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 828 PIAPIPFSLTFWKVYXKAVAF 890
           PI+  P S+TFW +   +V+F
Sbjct: 513 PISSTPISITFWVIMFLSVSF 533


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,347,638
Number of Sequences: 5004
Number of extensions: 64451
Number of successful extensions: 181
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)