Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0437.Seq
         (901 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0647 - 35267177-35267323,35267461-35267547,35268319-352684...    29   3.8  
01_05_0222 + 19462487-19462663,19462916-19462991,19463106-194631...    29   3.8  
03_02_0120 - 5728572-5728712,5728812-5728916,5729178-5729441,572...    29   6.7  
03_06_0237 - 32566999-32567086,32567742-32567772,32567832-32569197     28   8.8  

>03_06_0647 -
           35267177-35267323,35267461-35267547,35268319-35268451,
           35268571-35268620,35269131-35269202,35269782-35270004,
           35270331-35270604,35270687-35270813,35270942-35271189,
           35271682-35271772
          Length = 483

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -3

Query: 839 WRNWHDSVKIXRLXDSGP 786
           WR WH++V++  L D+GP
Sbjct: 302 WRPWHNTVRLTDLNDNGP 319


>01_05_0222 +
           19462487-19462663,19462916-19462991,19463106-19463185,
           19463293-19463342,19463436-19463520,19463640-19463738,
           19464110-19464346
          Length = 267

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 361 CRWTPRPSLLA-ARTQSPRATRANRSRSPQATDR 459
           CR    P L+  AR +SP +TR + ++SP A DR
Sbjct: 13  CRLVRLPLLVPYARRRSPLSTRCSAAQSPDAVDR 46


>03_02_0120 -
           5728572-5728712,5728812-5728916,5729178-5729441,
           5729809-5729958,5730070-5730150,5730481-5730597,
           5730679-5730831,5731426-5731569,5731773-5731802,
           5732070-5732430,5732682-5732849,5733371-5733600,
           5734088-5734194,5734275-5734623
          Length = 799

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +2

Query: 2   SKLLRFPILYM*SSQLYQRSALKYSSWTSFW 94
           +KL  F I YM   +LY+R  +  +S++ FW
Sbjct: 404 NKLFEFLISYMQVIKLYERCVIACASYSEFW 434


>03_06_0237 - 32566999-32567086,32567742-32567772,32567832-32569197
          Length = 494

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
 Frame = +1

Query: 64  AQIFFMDFFLDGEFSTYGSDVVSFTEMEPEERVDPMA---RVFPKVT 195
           A +F  D F DG  S  G D V F   E + +  P     R  P +T
Sbjct: 400 AYLFDPDIFADGRISVQGIDAVLFPPAETKTKTKPATARIRTAPAIT 446


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,770,290
Number of Sequences: 37544
Number of extensions: 429950
Number of successful extensions: 1142
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1142
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)