Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0437.Seq
         (901 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3112| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.3  
SB_11096| Best HMM Match : Fz (HMM E-Value=0.00044)                    31   1.3  

>SB_3112| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 138

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 18/56 (32%), Positives = 29/56 (51%)
 Frame = +1

Query: 322 YPEWNFFVIPHGRCRWTPRPSLLAARTQSPRATRANRSRSPQATDRRLVRFVPTRE 489
           Y  W  F   +GRC WTP   + +  ++S   +R++R    +  D+  V  +PTRE
Sbjct: 87  YRRWKLF---YGRCSWTPAGLVRSVTSKSIPMSRSSRYPCHKHVDQSDV-VLPTRE 138


>SB_11096| Best HMM Match : Fz (HMM E-Value=0.00044)
          Length = 918

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = +1

Query: 109 TYGSDVVSFTEMEPEERVDPMARVFPKVTKCTFHKYGPSGTCRNSTACVF 258
           TY    VSFT+      +D  + +F  +T C FH    + TCR     +F
Sbjct: 334 TYSITQVSFTDKRTYTVMDSRSILFALMTICCFHAIEATQTCRPMEDTIF 383


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,130,421
Number of Sequences: 59808
Number of extensions: 501488
Number of successful extensions: 1493
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1296
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1474
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)