Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0437.Seq
         (901 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   2.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.8  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   5.0  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   5.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   5.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +1

Query: 370 TPRPSLLAARTQSPRATRANRSRSPQATDRR 462
           TPR +    +   PR  R   +  P+ATD R
Sbjct: 144 TPRINFTKLKRHHPRYKRPRTTFEPRATDSR 174


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = -3

Query: 359 RPCGITKKFH 330
           RPCGIT  FH
Sbjct: 337 RPCGITLTFH 346


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 342 KEIPLRIDSIINQNQRNT*IFSLTIFNGKNTSRRISARTGWTVFMEGAFS 193
           +EI   I +II + + +  + +  ++  +NT    + RT W+  ++ A S
Sbjct: 353 QEITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSATVKAAIS 402


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = -2

Query: 342 KEIPLRIDSIINQNQRNT*IFSLTIFNGKNTSRRISARTGWTVFMEGAFS 193
           +EI   I +II + + +  + +  ++  +NT    + RT W+  ++ A S
Sbjct: 391 QEITGLIQNIIQEMKNDVLLSNNDVYLYQNTMSNNNQRTEWSATVKAAIS 440


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.6 bits (46), Expect = 5.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -1

Query: 595 LTVLQ*YTGVTILCRFLQTSPLARSSVLYNQWINVL 488
           +TV Q    V  L +  +T+P    SVLY  ++N +
Sbjct: 659 MTVFQRTLMVGSLGKLTETNPKLARSVLYKIYLNTM 694


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 226,915
Number of Sequences: 438
Number of extensions: 4715
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)