Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0437.Seq
         (901 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g51080.1 68418.m06331 RNase H domain-containing protein low s...    29   5.6  
At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related...    29   5.6  

>At5g51080.1 68418.m06331 RNase H domain-containing protein low
           similarity to GAG-POL precursor [Oryza sativa (japonica
           cultivar-group)] GI:5902445; contains Pfam profile
           PF00075: RNase H
          Length = 322

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +3

Query: 345 YTAWXLSLDPASVSTCCAHAVASRHK-SKSK 434
           YT+   SL PASVS    H  +SR K +KSK
Sbjct: 33  YTSLKSSLKPASVSVSSVHCYSSRSKTAKSK 63


>At4g14330.1 68417.m02207 phragmoplast-associated kinesin-related
           protein 2 (PAKRP2) identical to cDNA
           phragmoplast-associated kinesin-related protein 2
           (PAKRP2) GI:16973450
          Length = 869

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +1

Query: 64  AQIFFMDFFLDGEFSTYGSDVVSFTEMEPEERVDPMARVFPKV-TKCTFHKYGPSGTCRN 240
           A + + DF LDG   +    +  F +   EER+  +     KV  KCT   YGP+G  ++
Sbjct: 82  ADVGYRDFTLDGVSFSEQEGLEEFYKKFIEERIKGV-----KVGNKCTIMMYGPTGAGKS 136

Query: 241 ST 246
            T
Sbjct: 137 HT 138


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,474,467
Number of Sequences: 28952
Number of extensions: 341232
Number of successful extensions: 892
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)