Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0436.Seq
         (904 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    22   5.7  
AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    22   7.6  

>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 391 VLKPTYARIRTGGAMPV 441
           VLKP YA +R  G  P+
Sbjct: 63  VLKPIYALMRIVGIFPI 79


>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 24/103 (23%), Positives = 40/103 (38%), Gaps = 4/103 (3%)
 Frame = +1

Query: 253 HIAG*SLVKPKRNELKKQKI*PPQSPRTLVXXXXXXXXXXXTKNPN----VLKPTYARIR 420
           H+A  S +   + E + Q I P  +P  ++           T+  N    ++ PT     
Sbjct: 138 HLA--SCLNQGQKEPQVQVIVPEVAPNNIILGNGTGVQLVPTRLANGDIALVLPTQGASP 195

Query: 421 TGGAMPVPGPCASRAANARVQTEVPMPEIRRVSDE*AAVTRCK 549
               +P+P   AS A++A   +    PE   V      V RC+
Sbjct: 196 LPLLVPIPQRTASTASSASNYSPSQSPEPESVRPLSLVVRRCE 238


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,037
Number of Sequences: 336
Number of extensions: 3806
Number of successful extensions: 9
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)