Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0436.Seq
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    31   0.30 
SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransfer...    27   2.8  
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    27   3.6  
SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    27   4.8  
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    26   8.4  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   8.4  
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy...    26   8.4  

>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +3

Query: 33  SITVYLTNKQWLRRFDYQLFFYETATICSAFDNTVLFVKEISLSSLVIKGK 185
           S+T +++N  W++ +DY + F     +C    N     ++ISL   V+  K
Sbjct: 58  SVTEHVSNSWWIKLYDYMMTFISGEKLC--MQNVAYEFEDISLCMDVVGSK 106


>SPAC21E11.04 |ppr1||L-azetidine-2-carboxylic acid acetyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 209

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 343 PPKSVGSAEAIFSVSLIHSFLVLPNFTLRCEEYRNSGCL 227
           P   + +A   +  SL+ +F + PN+  RC    N G L
Sbjct: 84  PAPDLATASIDWKTSLLGAFYIKPNYPGRCSHICNGGFL 122


>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/48 (33%), Positives = 22/48 (45%)
 Frame = +3

Query: 396  EANVCEDQDWRRDACTGALREQGGQRQSTDRSSNARNQTSVRRVSRSN 539
            EAN     D +RD  T    +   +RQ     SN+R   ++ R  RSN
Sbjct: 1500 EANHRTSNDNKRDEVTEG--KDKNKRQDISGESNSRQNNAISRAGRSN 1545


>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 26.6 bits (56), Expect = 4.8
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
 Frame = -3

Query: 398 FNTLGFFVLPGLMIGE------LLPTKVRGLCGGYIF-CFFNSFLFGFTKLYP 261
           FN LGF ++P   +        LL + +  + G   F CFF +F++   KLYP
Sbjct: 518 FNDLGFSLIPSSFVPMNRNIFLLLISSLFIIAGNTGFPCFFRTFIWTTYKLYP 570


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +2

Query: 461 GRPTPEYRQKFQCQKSDECPTSEPQ*QDASEDRH 562
           GRP P  R++    K  E     P+ +   ED+H
Sbjct: 137 GRPEPSKRKRTARPKKPEAKEPSPKSRKTDEDKH 170


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -3

Query: 650 FMPIKIVEESRRLSAA*DGSQRKRF 576
           +MPI +V+E+ + + A D   RK+F
Sbjct: 517 YMPISLVDENMKAAHARDAIHRKKF 541


>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 802

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 15/53 (28%), Positives = 22/53 (41%)
 Frame = -1

Query: 343 PPKSVGSAEAIFSVSLIHSFLVLPNFTLRCEEYRNSGCLWFLRYFRCSCHNST 185
           PPK   S+ A   +S  + FL + +F L   +  + GC        C   N T
Sbjct: 542 PPKHPLSSTAEIVLSSCYRFLQIRSFVLTSHQLTSWGCPLLKALENCHLQNQT 594


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,175,066
Number of Sequences: 5004
Number of extensions: 59883
Number of successful extensions: 165
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)