Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0436.Seq
(904 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0784 + 20529526-20529604,20529996-20530562,20530687-205316... 35 0.077
02_05_1340 + 35797923-35799881 34 0.18
11_04_0293 + 15926561-15928834 33 0.24
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727... 33 0.41
11_01_0036 + 268028-268168,268734-268839,268920-269031,269126-26... 29 3.8
06_03_0570 - 22363197-22363588,22363755-22366782 29 3.8
05_07_0151 + 28038178-28038480,28038578-28038667,28039130-280391... 29 5.1
05_07_0111 - 27752339-27752777,27753356-27753840,27753956-27754120 29 5.1
04_04_0593 - 26480036-26481438,26481915-26482083 29 5.1
10_08_1053 - 22575281-22575409,22575516-22575653,22575786-225758... 29 6.7
04_04_0481 - 25541355-25541849,25541933-25542535,25542730-255428... 29 6.7
02_01_0388 + 2812235-2815003 28 8.8
>10_08_0784 +
20529526-20529604,20529996-20530562,20530687-20531639,
20532292-20532479,20532578-20533013
Length = 740
Score = 35.1 bits (77), Expect = 0.077
Identities = 13/34 (38%), Positives = 21/34 (61%)
Frame = -3
Query: 422 VLILAYVGFNTLGFFVLPGLMIGELLPTKVRGLC 321
V ++ Y F +GF +P ++ E+ PT VRG+C
Sbjct: 632 VSVILYFCFFVMGFGPIPNILCAEIFPTTVRGIC 665
Score = 32.7 bits (71), Expect = 0.41
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = -2
Query: 270 TLPCDVKNIGIAAVFGFFGISXXXXXXXXXXXLPETKGKSLLQIEQYY 127
TLP + IG+A VFG + + +PETKG L I +++
Sbjct: 683 TLPVMLNAIGLAGVFGIYAVVCILAFLFVFMKVPETKGMPLEVITEFF 730
>02_05_1340 + 35797923-35799881
Length = 652
Score = 33.9 bits (74), Expect = 0.18
Identities = 12/32 (37%), Positives = 21/32 (65%)
Frame = -3
Query: 416 ILAYVGFNTLGFFVLPGLMIGELLPTKVRGLC 321
++ Y+ +GF +P ++ E+ PT+VRGLC
Sbjct: 538 VVVYLCCFVMGFGPIPNILCAEIFPTRVRGLC 569
>11_04_0293 + 15926561-15928834
Length = 757
Score = 33.5 bits (73), Expect = 0.24
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = -3
Query: 416 ILAYVGFNTLGFFVLPGLMIGELLPTKVRGLC 321
++ Y +GF +P ++ E+ PT+VRGLC
Sbjct: 646 VIVYFCCFVMGFGPIPNILCAEIFPTRVRGLC 677
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/48 (29%), Positives = 24/48 (50%)
Frame = -2
Query: 270 TLPCDVKNIGIAAVFGFFGISXXXXXXXXXXXLPETKGKSLLQIEQYY 127
+LP + ++G+A VF F+ +PETKG L I +++
Sbjct: 695 SLPVMLSSVGLAGVFSFYAAVCCVALVFVALKVPETKGLPLEVIIEFF 742
>02_02_0155 +
7272563-7272630,7272934-7273031,7273491-7274057,
7275121-7276085,7276201-7276388,7276497-7276938
Length = 775
Score = 32.7 bits (71), Expect = 0.41
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -3
Query: 422 VLILAYVGFNTLGFFVLPGLMIGELLPTKVRGLC 321
+ ++ Y +GF +P ++ E+ PT+VRG+C
Sbjct: 665 ISVIIYFCCFVMGFGPIPNILCAEIFPTRVRGIC 698
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/48 (31%), Positives = 24/48 (50%)
Frame = -2
Query: 270 TLPCDVKNIGIAAVFGFFGISXXXXXXXXXXXLPETKGKSLLQIEQYY 127
+LP + IG+A VFG + + +PETKG L I +++
Sbjct: 716 SLPVMLNAIGLAGVFGIYAVVCSIAFVFVFLKVPETKGMPLEVITEFF 763
>11_01_0036 +
268028-268168,268734-268839,268920-269031,269126-269241,
269321-269399,269476-269614,269689-269747,269924-270218,
270303-270362,270502-270933
Length = 512
Score = 29.5 bits (63), Expect = 3.8
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +3
Query: 54 NKQWLRRFDYQLFFYETATICSAFDNTVLFVKEISLSSLV 173
N QW R Q+ + T+T C+ FD+ + E +SSL+
Sbjct: 247 NIQWWYRLRLQISDHTTSTSCTIFDDVAQSMLETPVSSLL 286
>06_03_0570 - 22363197-22363588,22363755-22366782
Length = 1139
Score = 29.5 bits (63), Expect = 3.8
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = +3
Query: 108 TICSAFDNTVLFVKEISLSSLVIKGKVELWQEQRKYRRNQRQPLFL 245
T CS FD T K + L +V G +E W Y+ R P+ L
Sbjct: 885 TACSTFDPTGHEFKALVLEYMV-NGNLECWLHPTSYKNRPRNPVRL 929
>05_07_0151 +
28038178-28038480,28038578-28038667,28039130-28039189,
28039274-28039339,28039562-28039627,28039719-28039794,
28039972-28040036,28040115-28040192,28040362-28040442,
28040526-28040610,28040702-28040748,28040969-28041028,
28041179-28041244,28041327-28041386,28041524-28041638,
28041733-28041845
Length = 476
Score = 29.1 bits (62), Expect = 5.1
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 422 VLILAYVGFNTLGFFVLPGLMIGELLPTKVRGLCGGY 312
V ++AY+ + G +P +M+ E+LP ++ L G +
Sbjct: 378 VALVAYIITFSFGMGAIPWVMMSEILPVSIKSLGGSF 414
>05_07_0111 - 27752339-27752777,27753356-27753840,27753956-27754120
Length = 362
Score = 29.1 bits (62), Expect = 5.1
Identities = 16/52 (30%), Positives = 27/52 (51%)
Frame = +1
Query: 388 NVLKPTYARIRTGGAMPVPGPCASRAANARVQTEVPMPEIRRVSDE*AAVTR 543
+V+ P Y + G MP+P S+ N RV+ ++ P R +D+ + V R
Sbjct: 309 SVINPGYEEVVRGEGMPIPKD-PSKKGNLRVKFDIKFP-ARLTADQKSGVKR 358
>04_04_0593 - 26480036-26481438,26481915-26482083
Length = 523
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -2
Query: 246 IGIAAVFGFFGISXXXXXXXXXXXLPETKGKSLLQIEQYYQ 124
I +A +F F + +PETKGK+L QIE ++
Sbjct: 454 ISVAGMFFVFAVISTVSVAFVYFCVPETKGKTLEQIEMMFE 494
>10_08_1053 -
22575281-22575409,22575516-22575653,22575786-22575884,
22576281-22576361,22577171-22577233,22577473-22577520,
22577622-22577990,22578082-22578183,22578290-22578414,
22578500-22578566,22578817-22578895,22578928-22579079,
22579182-22579223
Length = 497
Score = 28.7 bits (61), Expect = 6.7
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -3
Query: 422 VLILAYVGFNTLGFFVLPGLMIGELLPTKVRG 327
+ +L YVG L F + LMI E+ P ++RG
Sbjct: 399 IALLLYVGCYQLSFGPIGWLMISEVFPLRLRG 430
>04_04_0481 -
25541355-25541849,25541933-25542535,25542730-25542837,
25542925-25543260,25543391-25543461,25543692-25543824
Length = 581
Score = 28.7 bits (61), Expect = 6.7
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 422 VLILAYVGFNTLGFFVLPGLMIGELLPTKVRGLCGG 315
V + AY+ + G +P ++ E+ P + RG+CGG
Sbjct: 456 VALGAYIVSYSPGMGTVPWIVNSEIYPLRFRGVCGG 491
>02_01_0388 + 2812235-2815003
Length = 922
Score = 28.3 bits (60), Expect = 8.8
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 214 YFRCSCHNSTFPFITRDEREISFTNRTVLSKAEH 113
YF+C C +S F +ER+I N + A+H
Sbjct: 596 YFKCGCADSRRIFDLMEERDIFTWNTIITGYAQH 629
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,873,431
Number of Sequences: 37544
Number of extensions: 409805
Number of successful extensions: 1034
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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